Thhalv10025168m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10025168m.g T334739_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.552 0.761
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.552 0.761
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10025168m Sox 137 205
Thhalv10025168m Sox 254 320
Thhalv10025168m Sox 378 446

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB13 Arabidopsis thaliana AT4G11080 D 0.552
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.459
mgf015439m Mimulus guttatus mgf015439m I 0.458
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.447
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.554
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.654
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.634
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.562
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.571
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.609
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.456
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.483
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.471
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.524
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.478
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.483
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.510
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.511
MDP0000268093 Malus domestica MDP0000268093 I 0.435
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.434
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.525
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.563
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.460
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.536
HMGB6 Arabidopsis thaliana AT4G23800 I 0.629
Bo1g037180 Brassica oleracea Bo1g037180 I 0.653
Bra013731 Brassica rapa Bra013731 I 0.653
Bra035256 Brassica rapa Bra035256 I 0.492
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.450
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.560
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.449
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.417
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.466
30190.m010807 Ricinus communis 30190.m010807 I 0.493
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.512
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.495
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.417
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.468
TCM_016416 Theobroma cacao TCM_016416 I 0.530
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.502
Ca_05811 Cicer arietinum Ca_05811 I 0.434
Cla011101 Citrullus lanatus Cla011101 I 0.489
Pm024077 Prunus mume Pm024077 I 0.495
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.464