Bo2g007300 (Brassica oleracea)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 Bo2g007300 T342152_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.798 0.798
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.798 0.798
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.798 0.798
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.780 0.780
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.780 0.780
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.780 0.780
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.780 0.780
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.780 0.780
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.780 0.780
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.780 0.780
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.780 0.780
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.780 0.780
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.780 0.780
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g007300.1 TBP 23 105
Bo2g007300.1 TBP 113 197

Links

Other TBP family TFs
Other Brassica oleracea TFs

768 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ABF2 Arabidopsis thaliana AT1G45249 D
ABF1 Arabidopsis thaliana AT1G49720 D
ABI5 Arabidopsis thaliana AT2G36270 D
ABF4 Arabidopsis thaliana AT3G19290 D
ABF3 Arabidopsis thaliana AT4G34000 D
OS08G0471950 Oryza sativa OS08G0471950 D
PK18009.1 Cannabis sativa PK18009.1 D
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
AMTR_s00132p00065700 Amborella trichopoda AMTR_s00132p00065700 I
BGIOSGA004837 Oryza indica BGIOSGA004837 I
BGIOSGA005551 Oryza indica BGIOSGA005551 I
BGIOSGA022536 Oryza indica BGIOSGA022536 I
BGIOSGA028831 Oryza indica BGIOSGA028831 I
BGIOSGA030899 Oryza indica BGIOSGA030899 I
BGIOSGA040605 Oryza indica BGIOSGA040605 I
Bo1g007700 Brassica oleracea Bo1g007700 I
Bo1g114840 Brassica oleracea Bo1g114840 I
Bo3g073080 Brassica oleracea Bo3g073080 I
Bo5g115300 Brassica oleracea Bo5g115300 I
Bo6g006970 Brassica oleracea Bo6g006970 I
Bo6g018480 Brassica oleracea Bo6g018480 I
Bo7g116570 Brassica oleracea Bo7g116570 I
Bra011485 Brassica rapa Bra011485 I
Bra018800 Brassica rapa Bra018800 I
Bra022409 Brassica rapa Bra022409 I
Bra037533 Brassica rapa Bra037533 I
Bra040260 Brassica rapa Bra040260 I
BRADI3G38200 Brachypodium distachyon BRADI3G38200 I
BRADI4G32090 Brachypodium distachyon BRADI4G32090 I
F775_32479 Aegilops tauschii F775_32479 I
ABF2 Arabidopsis lyrata fgenesh2_kg.1__3804__AT1G45249.1 I
ABF1 Arabidopsis lyrata fgenesh2_kg.1__4055__AT1G49720.1 I
ABF4 Arabidopsis lyrata fgenesh2_kg.3__2145__AT3G19290.1 I
ABF3 Arabidopsis lyrata fgenesh2_kg.7__705__AT4G34000.1 I
GLYMA04G04170 Glycine max GLYMA04G04170 I
GLYMA06G04353 Glycine max GLYMA06G04353 I
GLYMA07G33600 Glycine max GLYMA07G33600 I
GLYMA10G08370 Glycine max GLYMA10G08370 I
GLYMA13G22061 Glycine max GLYMA13G22061 I
GRMZM2G002075 Zea mays GRMZM2G002075 I
GRMZM2G033413 Zea mays GRMZM2G033413 I
GRMZM2G157722 Zea mays GRMZM2G157722 I
GRMZM2G168079 Zea mays GRMZM2G168079 I
GRMZM2G478417 Zea mays GRMZM2G478417 I
GSMUA_Achr3G07000_001 Musa acuminata GSMUA_Achr3G07000_001 I
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I
GSMUA_Achr5G05690_001 Musa acuminata GSMUA_Achr5G05690_001 I
GSMUA_Achr5G24570_001 Musa acuminata GSMUA_Achr5G24570_001 I
GSMUA_Achr6G04270_001 Musa acuminata GSMUA_Achr6G04270_001 I
GSMUA_Achr6G30550_001 Musa acuminata GSMUA_Achr6G30550_001 I
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I
GSMUA_Achr9G27130_001 Musa acuminata GSMUA_Achr9G27130_001 I
LPERR01G32620 Leersia perrieri LPERR01G32620 I
LPERR02G27610 Leersia perrieri LPERR02G27610 I
LPERR06G06440 Leersia perrieri LPERR06G06440 I
LPERR08G14740 Leersia perrieri LPERR08G14740 I
LPERR09G09170 Leersia perrieri LPERR09G09170 I
MLOC_34679 Hordeum vulgare MLOC_34679 I
MLOC_66546 Hordeum vulgare MLOC_66546 I
MTR_3g101780 Medicago truncatula MTR_3g101780 I
MTR_4g085910 Medicago truncatula MTR_4g085910 I
MTR_7g104480 Medicago truncatula MTR_7g104480 I
OB01G46760 Oryza brachyantha OB01G46760 I
OB02G40680 Oryza brachyantha OB02G40680 I
OB06G16510 Oryza brachyantha OB06G16510 I
OB08G24950 Oryza brachyantha OB08G24950 I
OB09G19140 Oryza brachyantha OB09G19140 I
OBART01G37980 Oryza barthii OBART01G37980 I
OBART02G33770 Oryza barthii OBART02G33770 I
OBART06G07070 Oryza barthii OBART06G07070 I
OBART08G17810 Oryza barthii OBART08G17810 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM02G34210 Oryza glumaepatula OGLUM02G34210 I
OGLUM06G07500 Oryza glumaepatula OGLUM06G07500 I
OGLUM08G18640 Oryza glumaepatula OGLUM08G18640 I
OGLUM09G13130 Oryza glumaepatula OGLUM09G13130 I
OLONG_000475 Oryza longistaminata OLONG_000475 I
OLONG_001053 Oryza longistaminata OLONG_001053 I
OLONG_014546 Oryza longistaminata OLONG_014546 I
OMERI01G34950 Oryza meridionalis OMERI01G34950 I
OMERI02G32150 Oryza meridionalis OMERI02G32150 I
OMERI06G08210 Oryza meridionalis OMERI06G08210 I
OMERI09G10130 Oryza meridionalis OMERI09G10130 I
ONIVA02G33490 Oryza nivara ONIVA02G33490 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA06G08350 Oryza nivara ONIVA06G08350 I
ONIVA08G19830 Oryza nivara ONIVA08G19830 I
OPUNC01G36800 Oryza punctata OPUNC01G36800 I
OPUNC05G18710 Oryza punctata OPUNC05G18710 I
OPUNC06G06690 Oryza punctata OPUNC06G06690 I
OPUNC08G15700 Oryza punctata OPUNC08G15700 I
OPUNC09G11090 Oryza punctata OPUNC09G11090 I
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I
ORGLA02G0292000 Oryza glaberrima ORGLA02G0292000 I
ORGLA06G0066000 Oryza glaberrima ORGLA06G0066000 I
ORGLA08G0211300 Oryza glaberrima ORGLA08G0211300 I
ORGLA09G0097200 Oryza glaberrima ORGLA09G0097200 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI02G35260 Oryza rufipogon ORUFI02G35260 I
ORUFI08G19970 Oryza rufipogon ORUFI08G19970 I
ORUFI12G20810 Oryza rufipogon ORUFI12G20810 I
OS01G0859300 Oryza sativa OS01G0859300 I
BZIP23 Oryza sativa OS02G0766700 I
OS03G0322700 Oryza sativa OS03G0322700 I
BZIP46 Oryza sativa OS06G0211200 I
OS09G0456200 Oryza sativa OS09G0456200 I
PGSC0003DMG400002660 Solanum tuberosum PGSC0003DMG400002660 I
PGSC0003DMG400006211 Solanum tuberosum PGSC0003DMG400006211 I
PGSC0003DMG400008011 Solanum tuberosum PGSC0003DMG400008011 I
PGSC0003DMG400022931 Solanum tuberosum PGSC0003DMG400022931 I
PGSC0003DMG400025889 Solanum tuberosum PGSC0003DMG400025889 I
POPTR_0002s12710 Populus trichocarpa POPTR_0002s12710 I
ABI5 Populus trichocarpa POPTR_0006s08300 I
POPTR_0009s10400 Populus trichocarpa POPTR_0009s10400 I
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I
POPTR_0014s02810 Populus trichocarpa POPTR_0014s02810 I
PRUPE_ppa006503mg Prunus persica PRUPE_ppa006503mg I
PRUPE_ppa006752mg Prunus persica PRUPE_ppa006752mg I
Sb04g034190 Sorghum bicolor Sb04g034190 I
Sb06g026410 Sorghum bicolor Sb06g026410 I
Sb07g022965 Sorghum bicolor Sb07g022965 I
Sb08g003760 Sorghum bicolor Sb08g003760 I
Sb10g007090 Sorghum bicolor Sb10g007090 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
Si006889m.g Setaria italica Si006889m.g I
Si013904m.g Setaria italica Si013904m.g I
Si017618m.g Setaria italica Si017618m.g I
Si030114m.g Setaria italica Si030114m.g I
Solyc01g108080.2 Solanum lycopersicum Solyc01g108080.2 I
Solyc04g078840.2 Solanum lycopersicum Solyc04g078840.2 I
Solyc09g009490.2 Solanum lycopersicum Solyc09g009490.2 I
Solyc10g050210.1 Solanum lycopersicum Solyc10g050210.1 I
Solyc11g044560.1 Solanum lycopersicum Solyc11g044560.1 I
TCM_007074 Theobroma cacao TCM_007074 I
TCM_022574 Theobroma cacao TCM_022574 I
TCM_033824 Theobroma cacao TCM_033824 I
TCM_034992 Theobroma cacao TCM_034992 I
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
TRIUR3_26781 Triticum urartu TRIUR3_26781 I
TRIUR3_31111 Triticum urartu TRIUR3_31111 I
TRIUR3_33995 Triticum urartu TRIUR3_33995 I
VIT_03s0063g00310 Vitis vinifera VIT_03s0063g00310 I
DPBF2 Vitis vinifera VIT_06s0080g00340 I
ABF2 Vitis vinifera VIT_18s0001g10450 I
Ca_00791 Cicer arietinum Ca_00791 I
Ca_01548 Cicer arietinum Ca_01548 I
Ca_06458 Cicer arietinum Ca_06458 I
Cla016272 Citrullus lanatus Cla016272 I
Cla022926 Citrullus lanatus Cla022926 I
Pm001315 Prunus mume Pm001315 I
Pm005288 Prunus mume Pm005288 I
Pm021430 Prunus mume Pm021430 I
29625.m000702 Ricinus communis 29625.m000702 I
29801.m003176 Ricinus communis 29801.m003176 I
30055.m001548 Ricinus communis 30055.m001548 I
30170.m013868 Ricinus communis 30170.m013868 I
cassava11518.m1 Manihot esculenta cassava11518.m1 I
cassava12275.valid.m1 Manihot esculenta cassava12275.valid.m1 I
cassava16074.m1 Manihot esculenta cassava16074.m1 I
cassava17300.m1 Manihot esculenta cassava17300.m1 I
cassava32856.m1 Manihot esculenta cassava32856.m1 I
cassava42669.valid.m1 Manihot esculenta cassava42669.valid.m1 I
cassava42743.valid.m1 Manihot esculenta cassava42743.valid.m1 I
cassava42744.valid.m1 Manihot esculenta cassava42744.valid.m1 I
cassava42745.valid.m1 Manihot esculenta cassava42745.valid.m1 I
Cucsa.219780 Cucumis sativus Cucsa.219780 I
Cucsa.241090 Cucumis sativus Cucsa.241090 I
Cucsa.385090 Cucumis sativus Cucsa.385090 I
Cucsa.396070 Cucumis sativus Cucsa.396070 I
mgf002047m Mimulus guttatus mgf002047m I
mgf002176m Mimulus guttatus mgf002176m I
mgf007524m Mimulus guttatus mgf007524m I
mgf014602m Mimulus guttatus mgf014602m I
mgf020824m Mimulus guttatus mgf020824m I
Aquca_007_00660 Aquilegia coerulea Aquca_007_00660 I
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I
Bostr.19424s0732 Boechera stricta Bostr.19424s0732 I
Bostr.26675s0197 Boechera stricta Bostr.26675s0197 I
Bostr.7867s1253 Boechera stricta Bostr.7867s1253 I
Cagra.10917s0002 Capsella grandiflora Cagra.10917s0002 I
Cagra.1305s0026 Capsella grandiflora Cagra.1305s0026 I
Cagra.2481s0016 Capsella grandiflora Cagra.2481s0016 I
Cagra.4978s0002 Capsella grandiflora Cagra.4978s0002 I
Carubv10006251m.g Capsella rubella Carubv10006251m.g I
Carubv10009177m.g Capsella rubella Carubv10009177m.g I
Carubv10009399m.g Capsella rubella Carubv10009399m.g I
Carubv10013729m.g Capsella rubella Carubv10013729m.g I
Ciclev10001159m.g Citrus clementina Ciclev10001159m.g I
Ciclev10028435m.g Citrus clementina Ciclev10028435m.g I
Eucgr.F02337 Eucalyptus grandis Eucgr.F02337 I
Eucgr.G01436 Eucalyptus grandis Eucgr.G01436 I
Eucgr.I01145 Eucalyptus grandis Eucgr.I01145 I
evm.TU.supercontig_49.26 Carica papaya evm.TU.supercontig_49.26 I
evm.TU.supercontig_62.4 Carica papaya evm.TU.supercontig_62.4 I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene28250-v1.0-hybrid Fragaria vesca gene28250-v1.0-hybrid I
Gorai.002G240500 Gossypium raimondii Gorai.002G240500 I
Gorai.005G102300 Gossypium raimondii Gorai.005G102300 I
Gorai.005G237400 Gossypium raimondii Gorai.005G237400 I
Gorai.008G024700 Gossypium raimondii Gorai.008G024700 I
Gorai.009G212600 Gossypium raimondii Gorai.009G212600 I
Gorai.009G275700 Gossypium raimondii Gorai.009G275700 I
Gorai.013G044500 Gossypium raimondii Gorai.013G044500 I
Lus10002399.g Linum usitatissimum Lus10002399.g I
Lus10006489.g Linum usitatissimum Lus10006489.g I
Lus10009755.g Linum usitatissimum Lus10009755.g I
Lus10014066.g Linum usitatissimum Lus10014066.g I
Lus10014194.g Linum usitatissimum Lus10014194.g I
Lus10017049.g Linum usitatissimum Lus10017049.g I
Lus10021369.g Linum usitatissimum Lus10021369.g I
Lus10022720.g Linum usitatissimum Lus10022720.g I
Lus10027897.g Linum usitatissimum Lus10027897.g I
MDP0000248567 Malus domestica MDP0000248567 I
MDP0000296303 Malus domestica MDP0000296303 I
MDP0000701734 Malus domestica MDP0000701734 I
orange1.1g013197m.g Citrus sinensis orange1.1g013197m.g I
orange1.1g021624m.g Citrus sinensis orange1.1g021624m.g I
orange1.1g025340m.g Citrus sinensis orange1.1g025340m.g I
Pavir.Ba02029 Panicum virgatum Pavir.Ba02029 I
Pavir.Da01931 Panicum virgatum Pavir.Da01931 I
Pavir.Fa00674 Panicum virgatum Pavir.Fa00674 I
Pavir.Fb01750 Panicum virgatum Pavir.Fb01750 I
Pavir.J00256 Panicum virgatum Pavir.J00256 I
Pavir.J31353 Panicum virgatum Pavir.J31353 I
Pavir.J35078 Panicum virgatum Pavir.J35078 I
SapurV1A.0167s0060 Salix purpurea SapurV1A.0167s0060 I
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I
SapurV1A.0643s0160 Salix purpurea SapurV1A.0643s0160 I
SapurV1A.0878s0160 Salix purpurea SapurV1A.0878s0160 I
SapurV1A.3185s0030 Salix purpurea SapurV1A.3185s0030 I
Thhalv10011493m.g Eutrema salsugineum Thhalv10011493m.g I
Thhalv10012271m.g Eutrema salsugineum Thhalv10012271m.g I
Thhalv10020772m.g Eutrema salsugineum Thhalv10020772m.g I
Thhalv10025203m.g Eutrema salsugineum Thhalv10025203m.g I
PK02169.1 Cannabis sativa PK02169.1 I
LjT07K13.110.nd Lotus japonicus LjT07K13.110.nd I
Gorai.010G045600 Gossypium raimondii Gorai.010G045600 N