Solyc07g053410.2 (Solanum lycopersicum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 Solyc07g053410.2 T344420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.947 0.660
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.945 0.660
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.945 0.649
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.945 0.649
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.945 0.649
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.933 0.649
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.905 0.500
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.900 0.489
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.893 0.479
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.873 0.457
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.828 0.436
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.828 0.457
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.828 0.457
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g053410.2.1 TCP 22 152

Links

Other TCP family TFs
Other Solanum lycopersicum TFs

406 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N 0.000
TCM_017746 Theobroma cacao TCM_017746 N 0.000
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N 0.000
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N 0.000
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N 0.000
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N 0.000
SCR Vitis vinifera VIT_08s0056g00050 N 0.000
Ca_09530 Cicer arietinum Ca_09530 N 0.000
Cla012346 Citrullus lanatus Cla012346 N 0.000
Pm002956 Prunus mume Pm002956 N 0.000
30073.m002204 Ricinus communis 30073.m002204 N 0.000
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N 0.000
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N 0.000
Cucsa.002880 Cucumis sativus Cucsa.002880 N 0.000
mgf012242m Mimulus guttatus mgf012242m N 0.000
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N 0.000
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N 0.000
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N 0.000
Carubv10016802m.g Capsella rubella Carubv10016802m.g N 0.000
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N 0.000
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N 0.000
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N 0.000
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N 0.000
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N 0.000
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N 0.000
Lus10040734.g Linum usitatissimum Lus10040734.g N 0.000
MDP0000397638 Malus domestica MDP0000397638 N 0.000
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N 0.000
Pavir.J08573 Panicum virgatum Pavir.J08573 N 0.000
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N 0.000
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N 0.000
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N 0.000
MLOC_79758 Hordeum vulgare MLOC_79758 N 0.000
SCR Arabidopsis thaliana AT3G54220 N 0.000
BGIOSGA034703 Oryza indica BGIOSGA034703 N 0.000
BGIOSGA036912 Oryza indica BGIOSGA036912 N 0.000
Bo8g083500 Brassica oleracea Bo8g083500 N 0.000
Bra007056 Brassica rapa Bra007056 N 0.000
BRADI4G44090 Brachypodium distachyon BRADI4G44090 N 0.000
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N 0.000
GLYMA09G40620 Glycine max GLYMA09G40620 N 0.000
GLYMA18G45220 Glycine max GLYMA18G45220 N 0.000
GRMZM2G015080 Zea mays GRMZM2G015080 N 0.000
GRMZM2G131516 Zea mays GRMZM2G131516 N 0.000
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N 0.000
LPERR11G01220 Leersia perrieri LPERR11G01220 N 0.000
LPERR12G01340 Leersia perrieri LPERR12G01340 N 0.000
MLOC_64716 Hordeum vulgare MLOC_64716 N 0.000
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N 0.000
MTR_7g074650 Medicago truncatula MTR_7g074650 N 0.000
OBART11G01460 Oryza barthii OBART11G01460 N 0.000
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N 0.000
OLONG_010321 Oryza longistaminata OLONG_010321 N 0.000
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N 0.000
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N 0.000
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N 0.000
SCR1 Oryza sativa OS11G0124300 N 0.000
SCR2 Oryza sativa OS12G0122000 N 0.000
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N 0.000
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N 0.000
POPTR_0016s15060 Populus trichocarpa POPTR_0016s15060 N 0.000
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N 0.000
Sb05g001500 Sorghum bicolor Sb05g001500 N 0.000