gw1.117.121.1 (Physcomitrella patens)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gw1.117.121.1 T007253_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_gwp_gw1.C_550163
M01640_2.00 		Physcomitrella patens
NCACCGACHN
NDGTCGGTGN		 PBM
Weirauch et al.(2014)
pTH8472 		0.759 0.940
gw1.8.141.1
M01642_2.00 		Physcomitrella patens
CACCGACM
KGTCGGTG		 PBM
Weirauch et al.(2014)
pTH8456 		0.728 0.900
estExt_fgenesh1_pg.C_4800009
M01639_2.00 		Physcomitrella patens
MACCGACM
KGTCGGTK		 PBM
Weirauch et al.(2014)
pTH8488 		0.717 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.117.121.1 AP2 7 58

Links

Other AP2 family TFs
Other Physcomitrella patens TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I
BGIOSGA017556 Oryza indica BGIOSGA017556 I
BGIOSGA017860 Oryza indica BGIOSGA017860 I
BGIOSGA030113 Oryza indica BGIOSGA030113 I
BGIOSGA034612 Oryza indica BGIOSGA034612 I
BGIOSGA034613 Oryza indica BGIOSGA034613 N
BGIOSGA036756 Oryza indica BGIOSGA036756 N
BGIOSGA036757 Oryza indica BGIOSGA036757 N
Bo01002s040 Brassica oleracea Bo01002s040 I
Bo2g024040 Brassica oleracea Bo2g024040 I
Bo2g095820 Brassica oleracea Bo2g095820 I
Bo5g068250 Brassica oleracea Bo5g068250 I
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I
Bra002421 Brassica rapa Bra002421 I
Bra008454 Brassica rapa Bra008454 I
Bra008456 Brassica rapa Bra008456 I
Bra008459 Brassica rapa Bra008459 I
Bra020196 Brassica rapa Bra020196 I
Bra020197 Brassica rapa Bra020197 I
Bra023211 Brassica rapa Bra023211 I
Bra028918 Brassica rapa Bra028918 I
BRADI4G44370 Brachypodium distachyon BRADI4G44370 N
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I
Cagra.8153s0001 Capsella grandiflora Cagra.8153s0001 I
Carubv10002472m.g Capsella rubella Carubv10002472m.g I
Carubv10012720m.g Capsella rubella Carubv10012720m.g I
Carubv10021420m.g Capsella rubella Carubv10021420m.g I
Carubv10021860m.g Capsella rubella Carubv10021860m.g I
Carubv10021899m.g Capsella rubella Carubv10021899m.g I
Carubv10022120m.g Capsella rubella Carubv10022120m.g I
Ca_18932 Cicer arietinum Ca_18932 I
F775_02479 Aegilops tauschii F775_02479 N
F775_02480 Aegilops tauschii F775_02480 N
GRMZM2G169564 Zea mays GRMZM2G169564 N
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I
LPERR05G06630 Leersia perrieri LPERR05G06630 I
LPERR05G16170 Leersia perrieri LPERR05G16170 I
LPERR11G00960 Leersia perrieri LPERR11G00960 I
LPERR12G01070 Leersia perrieri LPERR12G01070 I
OB05G17240 Oryza brachyantha OB05G17240 I
OB05G27830 Oryza brachyantha OB05G27830 I
OB11G10760 Oryza brachyantha OB11G10760 N
OB12G11030 Oryza brachyantha OB12G11030 N
OBART05G08130 Oryza barthii OBART05G08130 I
OBART05G20340 Oryza barthii OBART05G20340 I
OBART11G01100 Oryza barthii OBART11G01100 N
OBART11G01110 Oryza barthii OBART11G01110 I
OBART12G00850 Oryza barthii OBART12G00850 N
OGLUM05G08540 Oryza glumaepatula OGLUM05G08540 I
OGLUM11G00850 Oryza glumaepatula OGLUM11G00850 I
OGLUM11G00870 Oryza glumaepatula OGLUM11G00870 I
OGLUM12G01400 Oryza glumaepatula OGLUM12G01400 N
OLONG_002978 Oryza longistaminata OLONG_002978 I
OLONG_019907 Oryza longistaminata OLONG_019907 I
OMERI05G18250 Oryza meridionalis OMERI05G18250 I
OMERI05G18260 Oryza meridionalis OMERI05G18260 I
OMERI11G01520 Oryza meridionalis OMERI11G01520 N
OMERI11G01570 Oryza meridionalis OMERI11G01570 N
ONIVA05G08650 Oryza nivara ONIVA05G08650 I
ONIVA05G21460 Oryza nivara ONIVA05G21460 I
ONIVA09G03360 Oryza nivara ONIVA09G03360 I
ONIVA11G01050 Oryza nivara ONIVA11G01050 N
ONIVA11G01230 Oryza nivara ONIVA11G01230 N
ONIVA11G01240 Oryza nivara ONIVA11G01240 I
OPUNC05G07410 Oryza punctata OPUNC05G07410 I
OPUNC05G17980 Oryza punctata OPUNC05G17980 I
OPUNC11G00970 Oryza punctata OPUNC11G00970 N
OPUNC12G00970 Oryza punctata OPUNC12G00970 N
ORGLA05G0070000 Oryza glaberrima ORGLA05G0070000 I
ORGLA09G0026100 Oryza glaberrima ORGLA09G0026100 I
ORGLA11G0201900 Oryza glaberrima ORGLA11G0201900 N
ORGLA11G0202000 Oryza glaberrima ORGLA11G0202000 I
ORGLA12G0007500 Oryza glaberrima ORGLA12G0007500 N
ORGLA12G0007600 Oryza glaberrima ORGLA12G0007600 N
ORUFI05G08750 Oryza rufipogon ORUFI05G08750 I
ORUFI05G21600 Oryza rufipogon ORUFI05G21600 I
OS05G0478800 Oryza sativa OS05G0478800 I
OS11G0117400 Oryza sativa OS11G0117400 N
OS11G0117500 Oryza sativa OS11G0117500 N
OS12G0116600 Oryza sativa OS12G0116600 N
OS12G0116700 Oryza sativa OS12G0116700 N
Pavir.Ca00459 Panicum virgatum Pavir.Ca00459 I
Pavir.Cb02194 Panicum virgatum Pavir.Cb02194 I
Pavir.Ga01476 Panicum virgatum Pavir.Ga01476 N
Pavir.Ha01933 Panicum virgatum Pavir.Ha01933 I
Pavir.J34713 Panicum virgatum Pavir.J34713 N
Pavir.J39511 Panicum virgatum Pavir.J39511 I
Sb05g001220 Sorghum bicolor Sb05g001220 N
Sb08g002560 Sorghum bicolor Sb08g002560 N
Sb08g002570 Sorghum bicolor Sb08g002570 N
Si010764m.g Setaria italica Si010764m.g N
Si010832m.g Setaria italica Si010832m.g N
Si019098m.g Setaria italica Si019098m.g N
Si025181m.g Setaria italica Si025181m.g I
Si027360m.g Setaria italica Si027360m.g N
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I
Traes_5AL_69A969FF4 Triticum aestivum Traes_5AL_69A969FF4 N
TRIUR3_26571 Triticum urartu TRIUR3_26571 N
VIT_08s0058g01390 Vitis vinifera VIT_08s0058g01390 I
WRKY38 Arabidopsis thaliana AT5G22570 D
WRKY38 Arabidopsis lyrata scaffold_602308.1 I
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I
WRKY62 Arabidopsis thaliana AT5G01900 D
WRKY63 Arabidopsis thaliana AT1G66600 D
WRKY64 Arabidopsis thaliana AT1G66560 I
WRKY66 Arabidopsis thaliana AT1G80590 I
WRKY67 Arabidopsis thaliana AT1G66550 I
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I