TCF12 (Macaca mulatta)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSMMUG00000004091 T035393_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.914 1.000
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.914 1.000
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.914 1.000
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.914 1.000
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.914 1.000
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.914 1.000
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.914 1.000
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.914 1.000
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.914 1.000
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.914 1.000
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.914 1.000
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.914 1.000
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.914 1.000
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.914 0.885
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.914 0.885
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.914 0.885
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.912 0.962
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.912 0.962
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.912 0.962
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.912 0.962
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.912 0.962
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.912 0.962
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.912 0.962
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.912 0.962
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.886 0.962
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.886 0.962
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.886 0.962
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.886 0.923
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.886 0.923
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.886 0.923
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.886 0.923
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.886 0.923
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.886 0.923
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.886 0.923
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000005474 bHLH 601 654
ENSMMUP00000005476 bHLH 580 633

Links

Other bHLH family TFs
Other Macaca mulatta TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000045 Ricinus communis 27494.m000045 I
27538.m000327 Ricinus communis 27538.m000327 I
30078.m002329 Ricinus communis 30078.m002329 I
AC207656.3_FG002 Zea mays AC207656.3_FG002 I
AMTR_s00148p00046020 Amborella trichopoda AMTR_s00148p00046020 I
AMTR_s00155p00082980 Amborella trichopoda AMTR_s00155p00082980 I
Aquca_030_00152 Aquilegia coerulea Aquca_030_00152 I
ARF10 Arabidopsis thaliana AT2G28350 I
ARF10 Oryza indica BGIOSGA016767 I
ARF10 Arabidopsis lyrata fgenesh2_kg.4__731__AT2G28350.1 I
ARF10 Vitis vinifera VIT_06s0004g02750 I
ARF16 Arabidopsis thaliana AT4G30080 D
ARF16 Arabidopsis lyrata scaffold_701217.1 I
ARF16 Vitis vinifera VIT_13s0019g04380 I
ARF18 Oryza sativa OS06G0685700 I
ARF22 Oryza sativa OS10G0479900 I
ARF8 Oryza sativa OS02G0628600 I
BGIOSGA008657 Oryza indica BGIOSGA008657 I
BGIOSGA033142 Oryza indica BGIOSGA033142 I
Bo1g014600 Brassica oleracea Bo1g014600 I
Bo4g071620 Brassica oleracea Bo4g071620 I
Bo7g114200 Brassica oleracea Bo7g114200 I
Bostr.27991s0089 Boechera stricta Bostr.27991s0089 I
Bostr.7867s0859 Boechera stricta Bostr.7867s0859 I
Bra011162 Brassica rapa Bra011162 I
Bra011955 Brassica rapa Bra011955 I
Bra024109 Brassica rapa Bra024109 I
BRADI1G33160 Brachypodium distachyon BRADI1G33160 I
BRADI3G28950 Brachypodium distachyon BRADI3G28950 I
BRADI3G49320 Brachypodium distachyon BRADI3G49320 I
Cagra.1744s0020 Capsella grandiflora Cagra.1744s0020 I
Cagra.1876s0007 Capsella grandiflora Cagra.1876s0007 I
Carubv10004220m.g Capsella rubella Carubv10004220m.g I
Carubv10022755m.g Capsella rubella Carubv10022755m.g I
cassava23558.valid.m1 Manihot esculenta cassava23558.valid.m1 I
cassava37879.valid.m1 Manihot esculenta cassava37879.valid.m1 I
cassava5984.valid.m1 Manihot esculenta cassava5984.valid.m1 I
cassava852.valid.m1 Manihot esculenta cassava852.valid.m1 I
Ca_02541 Cicer arietinum Ca_02541 I
Ca_08488 Cicer arietinum Ca_08488 I
Ca_17136 Cicer arietinum Ca_17136 I
Ca_26121 Cicer arietinum Ca_26121 I
chr1.LjT31L11.90.nd Lotus japonicus chr1.LjT31L11.90.nd I
chr3.LjT10E18.60.nc Lotus japonicus chr3.LjT10E18.60.nc I
Ciclev10011194m.g Citrus clementina Ciclev10011194m.g I
Ciclev10027901m.g Citrus clementina Ciclev10027901m.g I
Ciclev10030860m.g Citrus clementina Ciclev10030860m.g I
Cla008883 Citrullus lanatus Cla008883 I
Cla013979 Citrullus lanatus Cla013979 I
Cla018574 Citrullus lanatus Cla018574 I
Cla022413 Citrullus lanatus Cla022413 I
Cucsa.124410 Cucumis sativus Cucsa.124410 I
Cucsa.137650 Cucumis sativus Cucsa.137650 I
Cucsa.381330 Cucumis sativus Cucsa.381330 I
Cucsa.386060 Cucumis sativus Cucsa.386060 I
estExt_fgenesh1_pm.C_3390006 Physcomitrella patens estExt_fgenesh1_pm.C_3390006 I
Eucgr.G02838 Eucalyptus grandis Eucgr.G02838 I
Eucgr.J00923 Eucalyptus grandis Eucgr.J00923 I
Eucgr.K01240 Eucalyptus grandis Eucgr.K01240 I
evm.TU.supercontig_49.122 Carica papaya evm.TU.supercontig_49.122 I
evm.TU.supercontig_53.88 Carica papaya evm.TU.supercontig_53.88 I
evm.TU.supercontig_65.4 Carica papaya evm.TU.supercontig_65.4 I
e_gw1.279.55.1 Physcomitrella patens e_gw1.279.55.1 I
F775_32978 Aegilops tauschii F775_32978 I
gene02234-v1.0-hybrid Fragaria vesca gene02234-v1.0-hybrid I
gene09733-v1.0-hybrid Fragaria vesca gene09733-v1.0-hybrid I
gene16844-v1.0-hybrid Fragaria vesca gene16844-v1.0-hybrid I
gene23280-v1.0-hybrid Fragaria vesca gene23280-v1.0-hybrid I
GLYMA10G06080 Glycine max GLYMA10G06080 I
GLYMA10G35481 Glycine max GLYMA10G35481 I
GLYMA11G20490 Glycine max GLYMA11G20490 I
GLYMA12G08110 Glycine max GLYMA12G08110 I
GLYMA12G29720 Glycine max GLYMA12G29720 I
GLYMA13G20382 Glycine max GLYMA13G20382 I
GLYMA13G40030 Glycine max GLYMA13G40030 I
GLYMA19G36571 Glycine max GLYMA19G36571 I
GLYMA20G32040 Glycine max GLYMA20G32040 I
Gorai.003G142500 Gossypium raimondii Gorai.003G142500 I
Gorai.006G166400 Gossypium raimondii Gorai.006G166400 I
Gorai.009G107800 Gossypium raimondii Gorai.009G107800 I
Gorai.011G238900 Gossypium raimondii Gorai.011G238900 I
Gorai.012G004800 Gossypium raimondii Gorai.012G004800 I
Gorai.013G267100 Gossypium raimondii Gorai.013G267100 I
GRMZM2G081406 Zea mays GRMZM2G081406 I
GRMZM2G153233 Zea mays GRMZM2G153233 I
GRMZM2G159399 Zea mays GRMZM2G159399 I
GRMZM2G390641 Zea mays GRMZM2G390641 I
GSMUA_Achr11G22870_001 Musa acuminata GSMUA_Achr11G22870_001 I
GSMUA_Achr4G18240_001 Musa acuminata GSMUA_Achr4G18240_001 I
GSMUA_Achr8G18930_001 Musa acuminata GSMUA_Achr8G18930_001 I
LjSGA_045968.2 Lotus japonicus LjSGA_045968.2 I
LPERR02G20290 Leersia perrieri LPERR02G20290 I
LPERR04G15300 Leersia perrieri LPERR04G15300 I
LPERR06G21020 Leersia perrieri LPERR06G21020 I
LPERR10G09970 Leersia perrieri LPERR10G09970 I
Lus10016091.g Linum usitatissimum Lus10016091.g I
Lus10019940.g Linum usitatissimum Lus10019940.g I
Lus10021467.g Linum usitatissimum Lus10021467.g I
Lus10023519.g Linum usitatissimum Lus10023519.g I
Lus10026510.g Linum usitatissimum Lus10026510.g I
Lus10040403.g Linum usitatissimum Lus10040403.g I
MDP0000131481 Malus domestica MDP0000131481 I
MDP0000221322 Malus domestica MDP0000221322 I
MDP0000256621 Malus domestica MDP0000256621 I
MDP0000750392 Malus domestica MDP0000750392 I
mgf000336m Mimulus guttatus mgf000336m I
mgf005300m Mimulus guttatus mgf005300m I
mgf016139m Mimulus guttatus mgf016139m I
mgf024607m Mimulus guttatus mgf024607m I
MLOC_64795 Hordeum vulgare MLOC_64795 I
MLOC_77438 Hordeum vulgare MLOC_77438 I
MTR_1g064430 Medicago truncatula MTR_1g064430 I
MTR_1g094960 Medicago truncatula MTR_1g094960 I
MTR_2g094570 Medicago truncatula MTR_2g094570 I
MTR_4g058930 Medicago truncatula MTR_4g058930 I
MTR_7g101275 Medicago truncatula MTR_7g101275 I
OB02G32150 Oryza brachyantha OB02G32150 I
OB04G25990 Oryza brachyantha OB04G25990 I
OB06G32920 Oryza brachyantha OB06G32920 I
OB10G20590 Oryza brachyantha OB10G20590 I
OBART04G18910 Oryza barthii OBART04G18910 I
OBART06G25230 Oryza barthii OBART06G25230 I
OBART10G13410 Oryza barthii OBART10G13410 I
OGLUM01G18360 Oryza glumaepatula OGLUM01G18360 I
OGLUM02G25270 Oryza glumaepatula OGLUM02G25270 I
OGLUM06G26560 Oryza glumaepatula OGLUM06G26560 I
OGLUM10G13220 Oryza glumaepatula OGLUM10G13220 I
OLONG_000617 Oryza longistaminata OLONG_000617 I
OLONG_021130 Oryza longistaminata OLONG_021130 I
OMERI02G24320 Oryza meridionalis OMERI02G24320 I
OMERI04G15770 Oryza meridionalis OMERI04G15770 I
OMERI06G25370 Oryza meridionalis OMERI06G25370 I
OMERI10G10210 Oryza meridionalis OMERI10G10210 I
ONIVA02G27180 Oryza nivara ONIVA02G27180 I
ONIVA06G28270 Oryza nivara ONIVA06G28270 I
ONIVA06G31350 Oryza nivara ONIVA06G31350 I
ONIVA10G14700 Oryza nivara ONIVA10G14700 I
OPUNC02G22610 Oryza punctata OPUNC02G22610 I
OPUNC04G16630 Oryza punctata OPUNC04G16630 I
OPUNC06G22960 Oryza punctata OPUNC06G22960 I
OPUNC10G11840 Oryza punctata OPUNC10G11840 I
orange1.1g004896m.g Citrus sinensis orange1.1g004896m.g I
orange1.1g005075m.g Citrus sinensis orange1.1g005075m.g I
orange1.1g005482m.g Citrus sinensis orange1.1g005482m.g I
ORGLA02G0215100 Oryza glaberrima ORGLA02G0215100 I
ORGLA04G0160200 Oryza glaberrima ORGLA04G0160200 I
ORGLA06G0209500 Oryza glaberrima ORGLA06G0209500 I
ORGLA10G0115500 Oryza glaberrima ORGLA10G0115500 I
ORUFI02G26180 Oryza rufipogon ORUFI02G26180 I
ORUFI04G20430 Oryza rufipogon ORUFI04G20430 I
ORUFI06G27120 Oryza rufipogon ORUFI06G27120 I
ORUFI10G14150 Oryza rufipogon ORUFI10G14150 I
OS04G0519700 Oryza sativa OS04G0519700 I
Pavir.Da00107 Panicum virgatum Pavir.Da00107 I
Pavir.Gb00635 Panicum virgatum Pavir.Gb00635 I
Pavir.Ia01695 Panicum virgatum Pavir.Ia01695 I
Pavir.J03524 Panicum virgatum Pavir.J03524 I
Pavir.J24081 Panicum virgatum Pavir.J24081 I
Pavir.J26437 Panicum virgatum Pavir.J26437 I
Pavir.J37640 Panicum virgatum Pavir.J37640 I
PDK_20s1359671g001 Phoenix dactylifera PDK_20s1359671g001 I
PGSC0003DMG400008081 Solanum tuberosum PGSC0003DMG400008081 I
PGSC0003DMG400021560 Solanum tuberosum PGSC0003DMG400021560 I
PGSC0003DMG400024320 Solanum tuberosum PGSC0003DMG400024320 I
PK10136.1 Cannabis sativa PK10136.1 I
PK13064.1 Cannabis sativa PK13064.1 I
PK13393.1 Cannabis sativa PK13393.1 I
PK17007.1 Cannabis sativa PK17007.1 I
Pm018533 Prunus mume Pm018533 I
Pm019126 Prunus mume Pm019126 I
Pm030120 Prunus mume Pm030120 I
Pm031275 Prunus mume Pm031275 I
POPTR_0004s22130 Populus trichocarpa POPTR_0004s22130 I
POPTR_0006s12930 Populus trichocarpa POPTR_0006s12930 I
POPTR_0008s03890 Populus trichocarpa POPTR_0008s03890 I
POPTR_0010s23000 Populus trichocarpa POPTR_0010s23000 I
POPTR_0016s09150 Populus trichocarpa POPTR_0016s09150 I
POPTR_0848s00200 Populus trichocarpa POPTR_0848s00200 I
PRUPE_ppa002082mg Prunus persica PRUPE_ppa002082mg I
PRUPE_ppa002195mg Prunus persica PRUPE_ppa002195mg I
PRUPE_ppa002710mg Prunus persica PRUPE_ppa002710mg I
PRUPE_ppa003136mg Prunus persica PRUPE_ppa003136mg I
SapurV1A.0049s0400 Salix purpurea SapurV1A.0049s0400 I
SapurV1A.0141s0090 Salix purpurea SapurV1A.0141s0090 I
SapurV1A.0216s0160 Salix purpurea SapurV1A.0216s0160 I
SapurV1A.0518s0120 Salix purpurea SapurV1A.0518s0120 I
SapurV1A.0657s0050 Salix purpurea SapurV1A.0657s0050 I
SapurV1A.0986s0010 Salix purpurea SapurV1A.0986s0010 I
Sb01g019130 Sorghum bicolor Sb01g019130 I
Sb04g026610 Sorghum bicolor Sb04g026610 I
Sb10g027790 Sorghum bicolor Sb10g027790 I
SELMODRAFT_437622 Selaginella moellendorffii SELMODRAFT_437622 I
SELMODRAFT_444549 Selaginella moellendorffii SELMODRAFT_444549 I
SELMODRAFT_451564 Selaginella moellendorffii SELMODRAFT_451564 I
Si005991m.g Setaria italica Si005991m.g I
Si009541m.g Setaria italica Si009541m.g I
Si016509m.g Setaria italica Si016509m.g I
Si034525m.g Setaria italica Si034525m.g I
Solyc06g075150.2 Solanum lycopersicum Solyc06g075150.2 I
Solyc09g007810.2 Solanum lycopersicum Solyc09g007810.2 I
Solyc10g086130.1 Solanum lycopersicum Solyc10g086130.1 I
Solyc11g069500.1 Solanum lycopersicum Solyc11g069500.1 I
TCM_022163 Theobroma cacao TCM_022163 I
TCM_029792 Theobroma cacao TCM_029792 I
TCM_042067 Theobroma cacao TCM_042067 I
TCM_043157 Theobroma cacao TCM_043157 I
Thhalv10016329m.g Eutrema salsugineum Thhalv10016329m.g I
Thhalv10024601m.g Eutrema salsugineum Thhalv10024601m.g I
Traes_2BL_A1A475B0F Triticum aestivum Traes_2BL_A1A475B0F I
Traes_6DL_52A25BEA4 Triticum aestivum Traes_6DL_52A25BEA4 I
VIT_08s0040g01810 Vitis vinifera VIT_08s0040g01810 I