Kdm2b (Rattus norvegicus)
CxxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02008 (zf-CXXC) IPR002857 ENSRNOG00000025702 T168293_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KDM2B
M01911_2.00 		Homo sapiens
NNNNNNCGN
NCGNNNNNN		 PBM
Weirauch et al.(2014)
pTH9191 		1.000 1.000
kdm2ba
M01909_2.00 		Danio rerio
NNNNCGN
NCGNNNN		 PBM
Weirauch et al.(2014)
pTH8577 		0.979 0.979
FBXL19
M01916_2.00 		Tetraodon nigroviridis
NNNNCGNN
NNCGNNNN		 PBM
Weirauch et al.(2014)
pTH8570 		0.894 0.894
A6H8I1_DANRE
M01906_2.00 		Danio rerio
CGTACGYA
TRCGTACG		 PBM
Weirauch et al.(2014)
pTH9257 		0.851 0.851
KDM2A
M01915_2.00 		Meleagris gallopavo
NNNNYRNNNN
NNNNYRNNNN		 PBM
Weirauch et al.(2014)
pTH9212 		0.809 0.809
BGIBMGA012843
M01907_2.00 		Bombyx mori
NNCGCGTANVNN
NNBNTACGCGNN		 PBM
Weirauch et al.(2014)
pTH9239 		0.766 0.766
kdm2aa
M01910_2.00 		Danio rerio
NCGNNNNNN
NNNNNNCGN		 PBM
Weirauch et al.(2014)
pTH8585 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000050408 CxxC 347 393

Links

Other CxxC family TFs
Other Rattus norvegicus TFs

248 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29794.m003447 Ricinus communis 29794.m003447 I 0.000
AMTR_s00009p00263240 Amborella trichopoda AMTR_s00009p00263240 I 0.000
Aquca_001_00435 Aquilegia coerulea Aquca_001_00435 I 0.000
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.000
Bo1g010040 Brassica oleracea Bo1g010040 I 0.000
Bo3g171130 Brassica oleracea Bo3g171130 I 0.000
Bo7g115810 Brassica oleracea Bo7g115810 I 0.000
Bo9g171130 Brassica oleracea Bo9g171130 I 0.000
Bostr.20055s0087 Boechera stricta Bostr.20055s0087 I 0.000
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.000
Bra008956 Brassica rapa Bra008956 I 0.000
Bra011376 Brassica rapa Bra011376 I 0.000
Bra034531 Brassica rapa Bra034531 I 0.000
Bra037045 Brassica rapa Bra037045 I 0.000
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.000
Cagra.7526s0003 Capsella grandiflora Cagra.7526s0003 I 0.000
Carubv10000155m.g Capsella rubella Carubv10000155m.g I 0.000
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.000
Ca_01884 Cicer arietinum Ca_01884 I 0.000
Ca_14925 Cicer arietinum Ca_14925 I 0.000
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.000
Cla022565 Citrullus lanatus Cla022565 I 0.000
Cla023357 Citrullus lanatus Cla023357 I 0.000
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.000
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.000
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.000
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.000
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.000
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.000
F775_05724 Aegilops tauschii F775_05724 I 0.000
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.000
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.000
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.000
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.000
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.000
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.000
GSMUA_Achr2G03880_001 Musa acuminata GSMUA_Achr2G03880_001 N 0.000
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.000
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.000
MDP0000179225 Malus domestica MDP0000179225 I 0.000
MDP0000295807 Malus domestica MDP0000295807 I 0.000
MLOC_10556 Hordeum vulgare MLOC_10556 I 0.000
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.000
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.000
MYB3R-2 Oryza sativa OS01G0841500 I 0.000
MYB3R-4 Arabidopsis lyrata fgenesh2_kg.6__1121__AT5G11510.1 I 0.000
MYB3R4 Arabidopsis thaliana AT5G11510 D 0.000
OB01G18340 Oryza brachyantha OB01G18340 I 0.000
OB12G16480 Oryza brachyantha OB12G16480 I 0.000
OBART01G08110 Oryza barthii OBART01G08110 I 0.000
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.000
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.000
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.000
OMERI01G08160 Oryza meridionalis OMERI01G08160 I 0.000
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.000
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.000
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.000
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.000
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.000
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.000
OS12G0238000 Oryza sativa OS12G0238000 I 0.000
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.000
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.000
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.000
PK12011.1 Cannabis sativa PK12011.1 D 0.000
PK22174.1 Cannabis sativa PK22174.1 I 0.000
Pm018007 Prunus mume Pm018007 I 0.000
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.000
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.000
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.000
PRUPE_ppa022218mg Prunus persica PRUPE_ppa022218mg I 0.000
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.000
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.000
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.000
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.000
TCM_005402 Theobroma cacao TCM_005402 I 0.000
TCM_047091 Theobroma cacao TCM_047091 I 0.000
Thhalv10024320m.g Eutrema salsugineum Thhalv10024320m.g I 0.000
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.000
Traes_1AS_61D017632 Triticum aestivum Traes_1AS_61D017632 I 0.000
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.000
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.000
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.000
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.000
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.000