GLYMA06G47210 (Glycine max)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03101 (FAR1) IPR004330 GLYMA06G47210 T179434_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.900 0.900
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.900 0.900
FAR1
M06880_2.00 		Arabidopsis thaliana
NNYHCACGCGCYDNH
DNHRGCGCGTGDRNN		 Dap-seq
OMalley et al.(2016)
FAR1_col_a 		0.700 0.700
FAR1
M06881_2.00 		Arabidopsis thaliana
NNNNBDNDNNYHCACGCGCYD
HRGCGCGTGDRNNHNHVNNNN		 Dap-seq
OMalley et al.(2016)
FAR1_colamp_a 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA06G47210.1 FAR1 89 191

Links

Other FAR1 family TFs
Other Glycine max TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28694.m000665 Ricinus communis 28694.m000665 N
Bo1g134830 Brassica oleracea Bo1g134830 N
Bo5g132010 Brassica oleracea Bo5g132010 N
Bostr.28625s0323 Boechera stricta Bostr.28625s0323 N
Bra021513 Brassica rapa Bra021513 N
Bra027392 Brassica rapa Bra027392 N
Cagra.0736s0021 Capsella grandiflora Cagra.0736s0021 N
Carubv10014142m.g Capsella rubella Carubv10014142m.g N
cassava2716.m1 Manihot esculenta cassava2716.m1 N
cassava34925.m1 Manihot esculenta cassava34925.m1 N
Ca_10077 Cicer arietinum Ca_10077 N
chr3.CM0049.30.nd Lotus japonicus chr3.CM0049.30.nd N
Cla015827 Citrullus lanatus Cla015827 N
Cucsa.360530 Cucumis sativus Cucsa.360530 N
evm.TU.supercontig_25.41 Carica papaya evm.TU.supercontig_25.41 N
gene23043-v1.0-hybrid Fragaria vesca gene23043-v1.0-hybrid N
GLYMA07G01170 Glycine max GLYMA07G01170 N
GLYMA08G20550 Glycine max GLYMA08G20550 N
Gorai.011G064500 Gossypium raimondii Gorai.011G064500 N
LBD22 Arabidopsis thaliana AT3G13850 N
LBD22 Arabidopsis lyrata fgenesh2_kg.3__1489__AT3G13850.1 N
Lus10002513.g Linum usitatissimum Lus10002513.g N
Lus10003789.g Linum usitatissimum Lus10003789.g N
MDP0000257227 Malus domestica MDP0000257227 N
mgf019664m Mimulus guttatus mgf019664m N
MTR_8g017090 Medicago truncatula MTR_8g017090 N
PGSC0003DMG400004880 Solanum tuberosum PGSC0003DMG400004880 N
Pm013344 Prunus mume Pm013344 N
POPTR_0001s20110 Populus trichocarpa POPTR_0001s20110 N
POPTR_0003s04520 Populus trichocarpa POPTR_0003s04520 N
SapurV1A.0697s0010 Salix purpurea SapurV1A.0697s0010 N
Solyc06g062630.2 Solanum lycopersicum Solyc06g062630.2 N
TCM_029050 Theobroma cacao TCM_029050 N
TCM_029052 Theobroma cacao TCM_029052 N
Thhalv10021306m.g Eutrema salsugineum Thhalv10021306m.g N