lhx2b (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000016465 T213965_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.757 0.391
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.757 0.391
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.757 0.391
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.757 0.391
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.757 0.391
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.757 0.391
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.757 0.391
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.757 0.391
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.757 0.391
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.727 0.261
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.727 0.261
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.727 0.261
LHX2
M02085_2.00 		Homo sapiens
NNNYAAHDDN
NHHDTTRNNN		 PBM
Weirauch et al.(2014)
pTH5812 		0.377 1.000
Lhx2
M00380_2.00 		Mus musculus
NTAATKRN
NYMATTAN		 PBM
Berger et al.(2008)
Lhx2_0953 		0.377 1.000
Lhx9
M00406_2.00 		Mus musculus
NTAATDRN
NYHATTAN		 PBM
Berger et al.(2008)
Lhx9_3492 		0.377 1.000
LHX2
M03106_2.00 		Homo sapiens
NNTAATTAGN
NCTAATTANN		 SELEX
Jolma et al.(2013)
LHX2_1 		0.377 1.000
LHX2
M03107_2.00 		Homo sapiens
YAATTANVCTAATTR
YAATTAGBNTAATTR		 SELEX
Jolma et al.(2013)
LHX2_2 		0.377 1.000
LHX9
M03163_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
LHX9_1 		0.377 1.000
LHX9
M03164_2.00 		Homo sapiens
TAATTRGYMATTA
TAATKRCYAATTA		 SELEX
Jolma et al.(2013)
LHX9_2 		0.377 1.000
LHX9
M05170_2.00 		Homo sapiens
YTAATTRG
CYAATTAR		 SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX 		0.377 1.000
LHX9
M05173_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX 		0.377 1.000
LHX2
M09136_2.00 		Homo sapiens
NBYTAATTRVNB
VNBYAATTARVN		 Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A 		0.377 1.000
Lhx2
M09169_2.00 		Mus musculus
NNTAATKRGN
NCYMATTANN		 Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A 		0.377 1.000
Lhx2
M09562_2.00 		Mus musculus
NYTAATTA
TAATTARN		 Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068 		0.377 1.000
LHX2
M10655_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX2_Q4 		0.377 1.000
LHX2
M10656_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$LHX2_Q6 		0.377 1.000
LHX9
M05171_2.00 		Homo sapiens
YTAATTRS
SYAATTAR		 SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1 		0.377 1.000
LHX9
M05172_2.00 		Homo sapiens
HTAACGAB
VTCGTTAD		 SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2 		0.377 1.000
LHX9
M05174_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1 		0.377 1.000
LHX9
M05175_2.00 		Homo sapiens
HTAACGAB
VTCGTTAD		 SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2 		0.377 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000020614 Homeodomain 256 301

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

1222 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.000
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.000
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.000
BRADI2G07090 Brachypodium distachyon BRADI2G07090 N 0.000
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.000
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.000
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.000
Ca_11038 Cicer arietinum Ca_11038 N 0.000
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.000
chr6.CM0045.280.nd Lotus japonicus chr6.CM0045.280.nd N 0.000
Cla016088 Citrullus lanatus Cla016088 N 0.000
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.000
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.000
EuGene.0200010100 Micromonas sp RCC299 EuGene.0200010100 N 0.000
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.000
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.000
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.000
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.000
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.000
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.000
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.000
Gorai.008G062500 Gossypium raimondii Gorai.008G062500 N 0.000
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.000
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.000
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.000
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.000
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.000
MDP0000155077 Malus domestica MDP0000155077 N 0.000
MDP0000202739 Malus domestica MDP0000202739 N 0.000
MDP0000225222 Malus domestica MDP0000225222 N 0.000
mgf001526m Mimulus guttatus mgf001526m N 0.000
mgf014458m Mimulus guttatus mgf014458m N 0.000
mgf015980m Mimulus guttatus mgf015980m I 0.000
OBART02G01600 Oryza barthii OBART02G01600 N 0.000
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.000
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.000
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.000
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.000
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.000
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.000
OS02G0121100 Oryza sativa OS02G0121100 N 0.000
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.000
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.000
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.000
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.000
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.000
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.000
PK03316.1 Cannabis sativa PK03316.1 N 0.000
Pm020837 Prunus mume Pm020837 I 0.000
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.000
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.000
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.000
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.000
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.000
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.000
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N 0.000
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.000
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.000
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.000
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.000
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.000