e_gw.5.535.1 (Branchiostoma floridae)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 e_gw.5.535.1 T227317_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.664 0.522
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.664 0.522
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.664 0.522
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.664 0.522
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.664 0.522
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.664 0.522
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.664 0.522
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.664 0.522
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.664 0.522
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.5.535.1 Homeodomain 2 47

Links

Other Homeodomain family TFs
Other Branchiostoma floridae TFs

690 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_kg.C_130080 Fragilariopsis cylindrus estExt_fgenesh2_kg.C_130080 N
estExt_Genewise1Plus.C_70298 Fragilariopsis cylindrus estExt_Genewise1Plus.C_70298 N
fgenesh2_pg.7_#_214 Fragilariopsis cylindrus fgenesh2_pg.7_#_214 N
fgenesh2_pg.9_#_353 Fragilariopsis cylindrus fgenesh2_pg.9_#_353 N
MAM_05902 Metarhizium album MAM_05902 N
Phatr3_J38097 Phaeodactylum tricornutum Phatr3_J38097 N
Phatr3_J39045 Phaeodactylum tricornutum Phatr3_J39045 N
Phatr3_J47350 Phaeodactylum tricornutum Phatr3_J47350 N
Phatr3_J48554 Phaeodactylum tricornutum Phatr3_J48554 N
Phatr3_J49506 Phaeodactylum tricornutum Phatr3_J49506 N
Phatr3_J49937 Phaeodactylum tricornutum Phatr3_J49937 N
Phatr3_J49938 Phaeodactylum tricornutum Phatr3_J49938 N
S40285_05706 Stachybotrys chlorohalonata S40285_05706 N
TGME49_081900 Toxoplasma gondii TGME49_081900 N
Thaps10099 Thalassiosira pseudonana Thaps10099 N
Thaps11168 Thalassiosira pseudonana Thaps11168 N
Thaps22372 Thalassiosira pseudonana Thaps22372 N
Thaps22889 Thalassiosira pseudonana Thaps22889 N
Thaps24954 Thalassiosira pseudonana Thaps24954 N
Thaps4075 Thalassiosira pseudonana Thaps4075 N
Thaps4076 Thalassiosira pseudonana Thaps4076 N
Thaps5285 Thalassiosira pseudonana Thaps5285 N
Thapsdraft651 Thalassiosira pseudonana Thapsdraft651 N