rfx7 (Takifugu rubripes)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 ENSTRUG00000017897 T318550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Rfx7
M00823_2.00 		Mus musculus
GTYRCYRNSB
VSNYRGYRAC		 PBM
Weirauch et al.(2013)
pTH3516 		0.756 0.835
Rfx7
M00187_2.00 		Mus musculus
BGTHDYYRNN
NNYRRHDACV		 PBM
Badis et al.(2009)
Rfxdc2_3516 		0.756 0.835
RFX7
M05729_2.00 		Homo sapiens
BGTTRCYRY
RYRGYAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_HT-SELEX 		0.756 0.835
RFX7
M05730_2.00 		Homo sapiens
BGTTGCYRB
VYRGCAACV		 SELEX
Yin et al.(2017)
RFX7_eDBD_Methyl-HT-SELEX 		0.756 0.835
RFX5
M03458_2.00 		Homo sapiens
BGTTRCYATRGYAACV
BGTTRCYATRGYAACV		 SELEX
Jolma et al.(2013)
RFX5_1 		0.688 0.519
RFX5
M03459_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_2 		0.688 0.519
RFX5
M03460_2.00 		Homo sapiens
BGTTGCYATGGYAACV
BGTTRCCATRGCAACV		 SELEX
Jolma et al.(2013)
RFX5_3 		0.688 0.519
RFX5
M05725_2.00 		Homo sapiens
BGTTRCYANGBGTTGCYRN
NYRGCAACVCNTRGYAACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_1 		0.688 0.519
RFX5
M05726_2.00 		Homo sapiens
NYRVYAACSGTTRCYAN
NTRGYAACSGTTRBYRN		 SELEX
Yin et al.(2017)
RFX5_eDBD_HT-SELEX_2 		0.688 0.519
RFX5
M08009_2.00 		Homo sapiens
KCRBYDGTTRCYRRG
CYYRGYAACHRVYGM		 ChIP-seq
Gerstein et al.(2012)
GM12878_RFX5_Stanford 		0.688 0.519
RFX5
M08010_2.00 		Homo sapiens
DBVBYDGTTGCYRGGBVRR
YYBVCCYRGCAACHRVBVH		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_RFX5_Stanford 		0.688 0.519
RFX5
M08011_2.00 		Homo sapiens
TCVBYDGTTDCYRDG
CHYRGHAACHRVBGA		 ChIP-seq
Gerstein et al.(2012)
HeLa-S3_RFX5_Stanford 		0.688 0.519
RFX5
M08012_2.00 		Homo sapiens
YDGTTRCYRKGBVRV
BYBVCMYRGYAACHR		 ChIP-seq
Gerstein et al.(2012)
HepG2_RFX5_Stanford 		0.688 0.519
RFX5
M09364_2.00 		Homo sapiens
VNNVBYDGTTGCYRKGNVRV
BYBNCMYRGCAACHRVBNNB		 Misc
Kulakovskiy et al.(2013)
RFX5_HUMAN.H11MO.0.A 		0.688 0.519
RFX5
M09629_2.00 		Homo sapiens
NDGTTRCYADGV
BCHTRGYAACHN		 Misc
Heinz et al.(2010)
GM12878-Rfx5_GSE31477 		0.688 0.519
RFX5
M11249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_03 		0.688 0.519
RFX5
M11250_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RFX5_05 		0.688 0.519
RFX5
M05727_2.00 		Homo sapiens
BGTYRYYRNGBGTTGYYRN
NYRRCAACVCNYRRYRACV		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_1 		0.688 0.519
RFX5
M05728_2.00 		Homo sapiens
NTRGYAASSGTYRBYRN
NYRVYRACSSTTRCYAN		 SELEX
Yin et al.(2017)
RFX5_eDBD_Methyl-HT-SELEX_2 		0.688 0.519
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000045889 RFX 98 176
ENSTRUP00000045890 RFX 8 86

Links

Other RFX family TFs
Other Takifugu rubripes TFs

235 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30138.m003942 Ricinus communis 30138.m003942 I
30174.m008803 Ricinus communis 30174.m008803 I
30174.m009082 Ricinus communis 30174.m009082 I
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I
AMTR_s00047p00197010 Amborella trichopoda AMTR_s00047p00197010 I
Aquca_002_00889 Aquilegia coerulea Aquca_002_00889 I
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I
BGIOSGA007655 Oryza indica BGIOSGA007655 I
BGIOSGA017275 Oryza indica BGIOSGA017275 I
Bo5g001290 Brassica oleracea Bo5g001290 I
Bo8g118210 Brassica oleracea Bo8g118210 I
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I
Bra032662 Brassica rapa Bra032662 I
Bra033221 Brassica rapa Bra033221 I
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I
Carubv10009506m.g Capsella rubella Carubv10009506m.g I
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I
cassava19899.m1 Manihot esculenta cassava19899.m1 I
cassava39122.m1 Manihot esculenta cassava39122.m1 I
cassava43385.valid.m1 Manihot esculenta cassava43385.valid.m1 I
cassava7440.valid.m1 Manihot esculenta cassava7440.valid.m1 I
Ca_18942 Cicer arietinum Ca_18942 I
Ca_19449 Cicer arietinum Ca_19449 I
Ciclev10019546m.g Citrus clementina Ciclev10019546m.g I
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I
Cla001541 Citrullus lanatus Cla001541 I
Cla006776 Citrullus lanatus Cla006776 I
Cla018827 Citrullus lanatus Cla018827 I
Cla019331 Citrullus lanatus Cla019331 I
Cucsa.113410 Cucumis sativus Cucsa.113410 I
Cucsa.120620 Cucumis sativus Cucsa.120620 I
Cucsa.198630 Cucumis sativus Cucsa.198630 I
Cucsa.349620 Cucumis sativus Cucsa.349620 I
Eucgr.B03518 Eucalyptus grandis Eucgr.B03518 I
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I
evm.TU.supercontig_2783.1 Carica papaya evm.TU.supercontig_2783.1 I
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I
GLYMA0005S50 Glycine max GLYMA0005S50 I
GLYMA01G15258 Glycine max GLYMA01G15258 I
GLYMA03G27180 Glycine max GLYMA03G27180 I
GLYMA04G32002 Glycine max GLYMA04G32002 I
GLYMA07G14610 Glycine max GLYMA07G14610 I
GLYMA17G08840 Glycine max GLYMA17G08840 I
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I
GRMZM2G036297 Zea mays GRMZM2G036297 I
GRMZM2G058588 Zea mays GRMZM2G058588 I
GRMZM2G101499 Zea mays GRMZM2G101499 I
GRMZM2G168229 Zea mays GRMZM2G168229 I
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I
LPERR02G05080 Leersia perrieri LPERR02G05080 I
LPERR04G23580 Leersia perrieri LPERR04G23580 I
LPERR06G19480 Leersia perrieri LPERR06G19480 I
Lus10021141.g Linum usitatissimum Lus10021141.g I
Lus10028181.g Linum usitatissimum Lus10028181.g I
Lus10042882.g Linum usitatissimum Lus10042882.g I
MDP0000146640 Malus domestica MDP0000146640 I
MDP0000778465 Malus domestica MDP0000778465 I
MDP0000803116 Malus domestica MDP0000803116 I
mgf016085m Mimulus guttatus mgf016085m I
MLOC_326 Hordeum vulgare MLOC_326 I
MLOC_57503 Hordeum vulgare MLOC_57503 I
MTR_2g461920 Medicago truncatula MTR_2g461920 I
MTR_4g109770 Medicago truncatula MTR_4g109770 I
MTR_8g005960 Medicago truncatula MTR_8g005960 I
OB02G15090 Oryza brachyantha OB02G15090 I
OB04G34990 Oryza brachyantha OB04G34990 I
OB06G31100 Oryza brachyantha OB06G31100 I
OBART04G27990 Oryza barthii OBART04G27990 I
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I
OLONG_021174 Oryza longistaminata OLONG_021174 I
OMERI02G06720 Oryza meridionalis OMERI02G06720 I
OMERI04G23390 Oryza meridionalis OMERI04G23390 I
OMERI06G23430 Oryza meridionalis OMERI06G23430 I
ONIVA01G24470 Oryza nivara ONIVA01G24470 I
ONIVA04G26660 Oryza nivara ONIVA04G26660 I
OPUNC02G05050 Oryza punctata OPUNC02G05050 I
OPUNC04G25460 Oryza punctata OPUNC04G25460 I
OPUNC06G21190 Oryza punctata OPUNC06G21190 I
orange1.1g008680m.g Citrus sinensis orange1.1g008680m.g I
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I
PGSC0003DMG400023260 Solanum tuberosum PGSC0003DMG400023260 I
PGSC0003DMG400024527 Solanum tuberosum PGSC0003DMG400024527 I
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I
PK17790.1 Cannabis sativa PK17790.1 I
PK25779.1 Cannabis sativa PK25779.1 I
Pm014154 Prunus mume Pm014154 I
Pm017777 Prunus mume Pm017777 I
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I
POPTR_0010s16400 Populus trichocarpa POPTR_0010s16400 I
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I
POPTR_0015s07140 Populus trichocarpa POPTR_0015s07140 I
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I
SapurV1A.0072s0340 Salix purpurea SapurV1A.0072s0340 I
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I
Sb06g031290 Sorghum bicolor Sb06g031290 I
Sb10g026200 Sorghum bicolor Sb10g026200 I
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I
Si006559m.g Setaria italica Si006559m.g I
Si017338m.g Setaria italica Si017338m.g I
Si022315m.g Setaria italica Si022315m.g I
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I
Solyc03g114850.2 Solanum lycopersicum Solyc03g114850.2 I
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I
Solyc12g038520.1 Solanum lycopersicum Solyc12g038520.1 I
SPL10 Oryza indica BGIOSGA023408 I
SPL10 Oryza sativa OS06G0659100 I
SPL5 Oryza sativa OS02G0177300 I
SPL8 Arabidopsis thaliana AT1G02065 D
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I
SPL8 Oryza sativa OS04G0656500 I
SPL8 Vitis vinifera VIT_15s0021g02300 I
TCM_005622 Theobroma cacao TCM_005622 I
TCM_014330 Theobroma cacao TCM_014330 I
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I
TRIUR3_34351 Triticum urartu TRIUR3_34351 I
VIT_01s0011g00130 Vitis vinifera VIT_01s0011g00130 I
VIT_17s0000g05020 Vitis vinifera VIT_17s0000g05020 I