ENSBTAP00000027633-D1 (Bos grunniens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 ENSBTAP00000027633-D1 T333677_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sox8
M00197_2.00 		Mus musculus
NNNWBAAT
ATTVWNNN		 PBM
Badis et al.(2009)
Sox8_1733 		0.208 1.000
SOX8
M03483_2.00 		Homo sapiens
AACAATRTGCAGTGTT
AACACTGCAYATTGTT		 SELEX
Jolma et al.(2013)
SOX8_1 		0.208 1.000
SOX8
M03484_2.00 		Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT		 SELEX
Jolma et al.(2013)
SOX8_2 		0.208 1.000
SOX8
M03485_2.00 		Homo sapiens
RAACAATTKCAGTGTTN
NAACACTGMAATTGTTY		 SELEX
Jolma et al.(2013)
SOX8_3 		0.208 1.000
SOX8
M03486_2.00 		Homo sapiens
HATCAATTKCAGTGATN
NATCACTGMAATTGATD		 SELEX
Jolma et al.(2013)
SOX8_4 		0.208 1.000
SOX8
M03487_2.00 		Homo sapiens
TGAATRTKCAGTCA
TGACTGMAYATTCA		 SELEX
Jolma et al.(2013)
SOX8_5 		0.208 1.000
SOX8
M03488_2.00 		Homo sapiens
AACAATTDCAGTGTT
AACACTGHAATTGTT		 SELEX
Jolma et al.(2013)
SOX8_6 		0.208 1.000
SOX8
M03489_2.00 		Homo sapiens
ATGAATTKCAGTC
GACTGMAATTCAT		 SELEX
Jolma et al.(2013)
SOX8_7 		0.208 1.000
SOX8
M03490_2.00 		Homo sapiens
MATCAATTGCAGTGATK
MATCACTGCAATTGATK		 SELEX
Jolma et al.(2013)
SOX8_8 		0.208 1.000
SOX8
M05749_2.00 		Homo sapiens
NDAACAATRV
BYATTGTTHN		 SELEX
Yin et al.(2017)
SOX8_eDBD_HT-SELEX 		0.208 1.000
SOX8
M05751_2.00 		Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT		 SELEX
Yin et al.(2017)
SOX8_FL_HT-SELEX 		0.208 1.000
SOX8
M05750_2.00 		Homo sapiens
BYATTGTTNN
NNAACAATRV		 SELEX
Yin et al.(2017)
SOX8_eDBD_Methyl-HT-SELEX 		0.208 1.000
SOX8
M05752_2.00 		Homo sapiens
ACAATRVNNBYATTGT
ACAATRVNNBYATTGT		 SELEX
Yin et al.(2017)
SOX8_FL_Methyl-HT-SELEX 		0.208 1.000
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000027633-D1 Sox 1 36

Links

Other Sox family TFs
Other Bos grunniens TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29805.m001471 Ricinus communis 29805.m001471 I 0.000
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.000
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.000
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.000
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.000
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.000
Bo6g067310 Brassica oleracea Bo6g067310 I 0.000
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.000
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.000
Bra003132 Brassica rapa Bra003132 I 0.000
Bra029784 Brassica rapa Bra029784 I 0.000
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.000
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.000
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.000
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.000
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.000
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.000
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.000
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.000
Ca_12027 Cicer arietinum Ca_12027 I 0.000
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.000
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.000
Cla018106 Citrullus lanatus Cla018106 I 0.000
Cla018556 Citrullus lanatus Cla018556 I 0.000
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.000
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.000
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.000
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.000
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.000
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.000
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.000
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.000
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.000
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.000
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.000
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.000
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.000
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.000
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.000
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.000
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.000
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.000
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.000
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.000
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.000
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.000
MDP0000276000 Malus domestica MDP0000276000 N 0.000
mgf000337m Mimulus guttatus mgf000337m I 0.000
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.000
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.000
OB04G18770 Oryza brachyantha OB04G18770 I 0.000
OBART04G11650 Oryza barthii OBART04G11650 N 0.000
OBART04G11660 Oryza barthii OBART04G11660 N 0.000
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.000
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.000
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.000
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.000
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.000
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.000
OPUNC04G09650 Oryza punctata OPUNC04G09650 I 0.000
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.000
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.000
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.000
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.000
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.000
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.000
OS04G0408900 Oryza sativa OS04G0408900 N 0.000
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.000
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.000
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.000
Pm002519 Prunus mume Pm002519 N 0.000
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.000
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.000
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.000
S1FA1 Arabidopsis thaliana AT3G53370 I 0.000
S1FA2 Arabidopsis thaliana AT2G37120 I 0.000
S1FA2 Oryza sativa OS04G0408700 N 0.000
S1FA3 Arabidopsis thaliana AT3G09735 D 0.000
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.000
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.000
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.000
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.000
Si011030m.g Setaria italica Si011030m.g N 0.000
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.000
TCM_022113 Theobroma cacao TCM_022113 I 0.000
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.000
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.000
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.000
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.000
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.000
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.000
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.000