Cagra.0578s0089 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0578s0089 T007707_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2F
M06630_2.00 		Arabidopsis thaliana
YCDCCRCCGCY
RGCGGYGGHGR		 Dap-seq
OMalley et al.(2016)
AT3G57600_col_a 		0.820 1.000
PK08602.1
M01098_2.00 		Cannabis sativa
NYCACCGCYN
NRGCGGTGRN		 PBM
Lambert et al.(2019)
pTH11421 		0.755 0.880
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.680 0.800
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0578s0089.1.p AP2 26 77

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

79 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00039p00088760 Amborella trichopoda AMTR_s00039p00088760 I 0.685
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.752
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.755
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.680
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.820
DREB2F Arabidopsis thaliana AT3G57600 D 0.820
DREB2G Arabidopsis thaliana AT5G18450 D 0.680
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.680
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.820
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.761
Bo9g155940 Brassica oleracea Bo9g155940 I 0.680
Bo8g092010 Brassica oleracea Bo8g092010 I 0.797
Bo6g073020 Brassica oleracea Bo6g073020 I 0.800
Bo4g111040 Brassica oleracea Bo4g111040 I 0.799
Bra002159 Brassica rapa Bra002159 I 0.680
Bra007341 Brassica rapa Bra007341 I 0.797
Bra014617 Brassica rapa Bra014617 I 0.799
PK08602.1 Cannabis sativa PK08602.1 D 0.755
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.820
evm.TU.supercontig_1288.2 Carica papaya evm.TU.supercontig_1288.2 I 0.677
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.777
Ca_07264 Cicer arietinum Ca_07264 I 0.765
Cla017778 Citrullus lanatus Cla017778 I 0.752
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.775
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.775
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.760
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.766
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.808
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.680
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.765
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.721
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.761
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.765
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.761
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.762
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.765
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.768
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.755
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.767
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.767
chr1.CM0318.570.nd Lotus japonicus chr1.CM0318.570.nd I 0.752
MDP0000871361 Malus domestica MDP0000871361 I 0.759
MDP0000703626 Malus domestica MDP0000703626 I 0.759
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.765
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.765
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.765
OBART03G05550 Oryza barthii OBART03G05550 I 0.761
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.761
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.761
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.761
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.761
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.761
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.761
DREB2E Oryza sativa OS03G0174400 I 0.761
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.761
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.761
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.741
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.714
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.765
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.767
Pm025865 Prunus mume Pm025865 I 0.759
Pm003634 Prunus mume Pm003634 I 0.679
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.680
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.759
27810.m000639 Ricinus communis 27810.m000639 I 0.765
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.765
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.753
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.744
SELMODRAFT_27203 Selaginella moellendorffii SELMODRAFT_27203 I 0.684
SELMODRAFT_38483 Selaginella moellendorffii SELMODRAFT_38483 I 0.684
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.744
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.753
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.765
TCM_024756 Theobroma cacao TCM_024756 I 0.775
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.769
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.765
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.761
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.761
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.769