Pavir.Ea00429 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ea00429 T009417_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q8H769_WHEAT
M09721_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1_01 		0.764 0.918
PK07402.1
M01097_2.00 		Cannabis sativa
NVRCCGMCH
DGKCGGYBN		 PBM
Lambert et al.(2019)
pTH11436 		0.729 0.857
DREB2G
M06662_2.00 		Arabidopsis thaliana
DCCRCCGCYDYHDYH
DRHDRHRGCGGYGGH		 Dap-seq
OMalley et al.(2016)
At5g18450_col_a 		0.697 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea00429.1.p AP2 78 129

Links

Other AP2 family TFs
Other Panicum virgatum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05774 Aegilops tauschii F775_05774 I 0.764
F775_32062 Aegilops tauschii F775_32062 I 0.678
Aquca_030_00214 Aquilegia coerulea Aquca_030_00214 I 0.688
DREB2C Arabidopsis lyrata scaffold_402826.1 I 0.679
scaffold_601912.1 Arabidopsis lyrata scaffold_601912.1 I 0.697
DREB2G Arabidopsis thaliana AT5G18450 D 0.697
Bostr.26527s0367 Boechera stricta Bostr.26527s0367 I 0.697
BRADI2G04000 Brachypodium distachyon BRADI2G04000 I 0.780
Bo2g016490 Brassica oleracea Bo2g016490 I 0.677
Bo4g190040 Brassica oleracea Bo4g190040 I 0.697
Bo9g155940 Brassica oleracea Bo9g155940 I 0.697
Bo9g177130 Brassica oleracea Bo9g177130 I 0.695
Bra002159 Brassica rapa Bra002159 I 0.697
Bra017011 Brassica rapa Bra017011 I 0.697
Bra023674 Brassica rapa Bra023674 I 0.677
PK07402.1 Cannabis sativa PK07402.1 D 0.729
PK07829.1 Cannabis sativa PK07829.1 I 0.700
Cagra.0712s0008 Capsella grandiflora Cagra.0712s0008 I 0.695
Carubv10002425m.g Capsella rubella Carubv10002425m.g I 0.695
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I 0.743
evm.TU.supercontig_51.23 Carica papaya evm.TU.supercontig_51.23 I 0.696
Cla006713 Citrullus lanatus Cla006713 I 0.720
Ciclev10032029m.g Citrus clementina Ciclev10032029m.g I 0.710
orange1.1g019546m.g Citrus sinensis orange1.1g019546m.g I 0.710
Cucsa.136780 Cucumis sativus Cucsa.136780 I 0.721
Eucgr.G03094 Eucalyptus grandis Eucgr.G03094 I 0.717
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I 0.697
Thhalv10015907m.g Eutrema salsugineum Thhalv10015907m.g I 0.697
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.709
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.681
gene01985-v1.0-hybrid Fragaria vesca gene01985-v1.0-hybrid I 0.695
gene21047-v1.0-hybrid Fragaria vesca gene21047-v1.0-hybrid I 0.715
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.678
Gorai.011G235900 Gossypium raimondii Gorai.011G235900 I 0.691
MLOC_66686 Hordeum vulgare MLOC_66686 I 0.764
LPERR01G03760 Leersia perrieri LPERR01G03760 I 0.783
Lus10012226.g Linum usitatissimum Lus10012226.g I 0.693
Lus10023633.g Linum usitatissimum Lus10023633.g I 0.698
Lus10034902.g Linum usitatissimum Lus10034902.g I 0.698
MDP0000147009 Malus domestica MDP0000147009 I 0.705
MDP0000153866 Malus domestica MDP0000153866 I 0.710
MDP0000165880 Malus domestica MDP0000165880 I 0.709
MDP0000290585 Malus domestica MDP0000290585 I 0.696
MDP0000446783 Malus domestica MDP0000446783 I 0.705
MDP0000880312 Malus domestica MDP0000880312 I 0.695
cassava19475.valid.m1 Manihot esculenta cassava19475.valid.m1 I 0.726
MTR_5g083330 Medicago truncatula MTR_5g083330 I 0.691
MTR_5g083340 Medicago truncatula MTR_5g083340 I 0.705
mgf017629m Mimulus guttatus mgf017629m I 0.679
GSMUA_Achr11G24820_001 Musa acuminata GSMUA_Achr11G24820_001 I 0.722
GSMUA_Achr5G28050_001 Musa acuminata GSMUA_Achr5G28050_001 I 0.700
GSMUA_Achr6G32780_001 Musa acuminata GSMUA_Achr6G32780_001 I 0.688
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I 0.731
GSMUA_AchrUn_randomG08690_001 Musa acuminata GSMUA_AchrUn_randomG08690_001 I 0.678
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I 0.732
OBART01G04210 Oryza barthii OBART01G04210 I 0.775
OB01G13930 Oryza brachyantha OB01G13930 I 0.775
ORGLA01G0037700 Oryza glaberrima ORGLA01G0037700 I 0.775
OGLUM01G04560 Oryza glumaepatula OGLUM01G04560 I 0.775
BGIOSGA002846 Oryza indica BGIOSGA002846 I 0.775
OLONG_014228 Oryza longistaminata OLONG_014228 I 0.775
OMERI01G04110 Oryza meridionalis OMERI01G04110 I 0.775
ONIVA01G04630 Oryza nivara ONIVA01G04630 I 0.775
OPUNC01G03970 Oryza punctata OPUNC01G03970 I 0.775
ORUFI01G04360 Oryza rufipogon ORUFI01G04360 I 0.775
DREB2A Oryza sativa OS01G0165000 I 0.775
Pavir.J37967 Panicum virgatum Pavir.J37967 I 0.796
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.740
gw1.120.55.1 Physcomitrella patens gw1.120.55.1 I 0.680
POPTR_0008s07360 Populus trichocarpa POPTR_0008s07360 I 0.712
POPTR_0010s19100 Populus trichocarpa POPTR_0010s19100 I 0.721
Pm015262 Prunus mume Pm015262 I 0.697
Pm018989 Prunus mume Pm018989 I 0.704
PRUPE_ppa007606mg Prunus persica PRUPE_ppa007606mg I 0.704
PRUPE_ppa022733mg Prunus persica PRUPE_ppa022733mg I 0.697
PRUPE_ppa022996mg Prunus persica PRUPE_ppa022996mg I 0.687
PRUPE_ppa026176mg Prunus persica PRUPE_ppa026176mg I 0.685
29729.m002292 Ricinus communis 29729.m002292 I 0.733
SapurV1A.0673s0120 Salix purpurea SapurV1A.0673s0120 I 0.706
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.719
SapurV1A.1420s0050 Salix purpurea SapurV1A.1420s0050 I 0.706
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.719
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.679
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.679
Si002067m.g Setaria italica Si002067m.g I 0.769
Solyc04g050750.1 Solanum lycopersicum Solyc04g050750.1 I 0.682
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.720
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.720
PGSC0003DMG400028700 Solanum tuberosum PGSC0003DMG400028700 I 0.682
Sb03g004980 Sorghum bicolor Sb03g004980 I 0.778
TCM_043275 Theobroma cacao TCM_043275 I 0.681
TCM_043302 Theobroma cacao TCM_043302 I 0.683
TCM_043306 Theobroma cacao TCM_043306 I 0.683
Q8H769_WHEAT Triticum aestivum Q8H769_WHEAT D 0.764
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.678
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.678
Traes_3AS_62742A0471 Triticum aestivum Traes_3AS_62742A0471 I 0.764
TRAES3BF064700080CFD_g Triticum aestivum TRAES3BF064700080CFD_g I 0.764
Traes_5BL_7F0FD1538 Triticum aestivum Traes_5BL_7F0FD1538 I 0.755
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.678
TRIUR3_17973 Triticum urartu TRIUR3_17973 I 0.764
VIT_13s0067g01960 Vitis vinifera VIT_13s0067g01960 I 0.740