C2H2 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_600374.1 T128315_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.827 1.000
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.820 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.820 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.820 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600374.1 C2H2 ZF 89 111
scaffold_600374.1 C2H2 ZF 150 172

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I 0.000
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I 0.000
HMGB6 Arabidopsis thaliana AT4G23800 I 0.000
HMGB13 Arabidopsis thaliana AT4G11080 D 0.000
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I 0.000
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I 0.000
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I 0.000
Bo1g037180 Brassica oleracea Bo1g037180 I 0.000
Bra013731 Brassica rapa Bra013731 I 0.000
Bra035256 Brassica rapa Bra035256 I 0.000
Cagra.3839s0003 Capsella grandiflora Cagra.3839s0003 I 0.000
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I 0.000
Carubv10007590m.g Capsella rubella Carubv10007590m.g I 0.000
Carubv10000930m.g Capsella rubella Carubv10000930m.g I 0.000
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I 0.000
Ca_05811 Cicer arietinum Ca_05811 I 0.000
Cla011101 Citrullus lanatus Cla011101 I 0.000
Ciclev10023918m.g Citrus clementina Ciclev10023918m.g I 0.000
Cucsa.107270 Cucumis sativus Cucsa.107270 I 0.000
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I 0.000
Thhalv10028648m.g Eutrema salsugineum Thhalv10028648m.g I 0.000
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I 0.000
GLYMA05G37010 Glycine max GLYMA05G37010 I 0.000
GLYMA08G02550 Glycine max GLYMA08G02550 N 0.000
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I 0.000
Lus10032379.g Linum usitatissimum Lus10032379.g I 0.000
Lus10003904.g Linum usitatissimum Lus10003904.g I 0.000
Lus10001909.g Linum usitatissimum Lus10001909.g I 0.000
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I 0.000
MDP0000268093 Malus domestica MDP0000268093 I 0.000
mgf015439m Mimulus guttatus mgf015439m I 0.000
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I 0.000
Pavir.J07596 Panicum virgatum Pavir.J07596 I 0.000
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I 0.000
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I 0.000
Pm024077 Prunus mume Pm024077 I 0.000
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I 0.000
30190.m010807 Ricinus communis 30190.m010807 I 0.000
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I 0.000
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I 0.000
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I 0.000
Sb04g009610 Sorghum bicolor Sb04g009610 I 0.000
TCM_016416 Theobroma cacao TCM_016416 I 0.000
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I 0.000