Pavir.Ib01978 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ib01978 T143391_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01978.1.p C2H2 ZF 63 85

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0006_290 Arabidopsis lyrata Al_scaffold_0006_290 I
Bostr.2128s0069 Boechera stricta Bostr.2128s0069 I
Cagra.0463s0004 Capsella grandiflora Cagra.0463s0004 I
Cagra.0154s0024 Capsella grandiflora Cagra.0154s0024 I
Carubv10002831m.g Capsella rubella Carubv10002831m.g I
Cla018641 Citrullus lanatus Cla018641 I
Ciclev10016895m.g Citrus clementina Ciclev10016895m.g I
Cucsa.125070 Cucumis sativus Cucsa.125070 I
GLYMA12G18720 Glycine max GLYMA12G18720 I
Gorai.002G067100 Gossypium raimondii Gorai.002G067100 I
Lus10008641.g Linum usitatissimum Lus10008641.g I
Lus10035583.g Linum usitatissimum Lus10035583.g I
LjSGA_022706.2 Lotus japonicus LjSGA_022706.2 I
MDP0000316497 Malus domestica MDP0000316497 I
MDP0000909160 Malus domestica MDP0000909160 I
POPTR_0017s04820 Populus trichocarpa POPTR_0017s04820 I
POPTR_0007s01370 Populus trichocarpa POPTR_0007s01370 I
29983.m003123 Ricinus communis 29983.m003123 I
SapurV1A.2554s0010 Salix purpurea SapurV1A.2554s0010 I
SapurV1A.3101s0010 Salix purpurea SapurV1A.3101s0010 I
Solyc02g077590.1 Solanum lycopersicum Solyc02g077590.1 I
PGSC0003DMG400031777 Solanum tuberosum PGSC0003DMG400031777 I
TCM_031644 Theobroma cacao TCM_031644 I
VIT_08s0007g04200 Vitis vinifera VIT_08s0007g04200 I