Scas_Contig712.15 (Saccharomyces castellii)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 Scas_Contig712.15 T160785_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAP2
M08452_2.00 		Saccharomyces cerevisiae
TTGGH
DCCAA		 COMPILED
Mathelier et al.(2014)
MA0313.1 		0.893 0.893
NFYA
M08104_2.00 		Homo sapiens
NSTGATTGGYB
VRCCAATCASN		 ChIP-seq
Mathelier et al.(2014)
MA0060.3 		0.714 0.714
NFYA
M09018_2.00 		Homo sapiens
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A 		0.714 0.714
Nfya
M09019_2.00 		Mus musculus
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A 		0.714 0.714
NFYA
M10403_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_02 		0.714 0.714
NFYA
M10404_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_Q5 		0.714 0.714
NFYA
M10405_2.00 		Homo sapiens
NYTGATTGGYTAVH
DBTARCCAATCARN		 Transfac
Matys et al.(2006)
V$NFY_C 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig712.15 CBF/NF-Y 161 216

Links

Other CBF/NF-Y family TFs
Other Saccharomyces castellii TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I
PC-MYB1 Arabidopsis thaliana AT4G32730 D
MYB3R-3 Arabidopsis thaliana AT3G09370 I
MYB3R5 Arabidopsis thaliana AT5G02320 D
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I
Bo9g184660 Brassica oleracea Bo9g184660 I
Bo3g171130 Brassica oleracea Bo3g171130 I
Bo1g144510 Brassica oleracea Bo1g144510 I
Bra034067 Brassica rapa Bra034067 I
Bra034531 Brassica rapa Bra034531 I
Bra009597 Brassica rapa Bra009597 I
PK12011.1 Cannabis sativa PK12011.1 D
PK11664.1 Cannabis sativa PK11664.1 I
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I
Carubv10000643m.g Capsella rubella Carubv10000643m.g I
Carubv10013377m.g Capsella rubella Carubv10013377m.g I
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I
Ca_14925 Cicer arietinum Ca_14925 I
Cla023357 Citrullus lanatus Cla023357 I
Cla018173 Citrullus lanatus Cla018173 I
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I
Cucsa.175460 Cucumis sativus Cucsa.175460 I
Cucsa.311420 Cucumis sativus Cucsa.311420 I
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I
GLYMA18G39740 Glycine max GLYMA18G39740 I
GLYMA07G15820 Glycine max GLYMA07G15820 I
GLYMA06G08660 Glycine max GLYMA06G08660 I
GLYMA04G08550 Glycine max GLYMA04G08550 I
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I
LPERR01G31650 Leersia perrieri LPERR01G31650 I
Lus10024394.g Linum usitatissimum Lus10024394.g I
Lus10025351.g Linum usitatissimum Lus10025351.g I
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I
MDP0000295807 Malus domestica MDP0000295807 I
MDP0000219581 Malus domestica MDP0000219581 I
MDP0000179225 Malus domestica MDP0000179225 I
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I
MTR_3g110028 Medicago truncatula MTR_3g110028 I
MTR_1g026870 Medicago truncatula MTR_1g026870 I
MTR_7g061330 Medicago truncatula MTR_7g061330 I
MTR_7g461410 Medicago truncatula MTR_7g461410 I
mgf019610m Mimulus guttatus mgf019610m I
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I
OBART01G36770 Oryza barthii OBART01G36770 N
OB01G45570 Oryza brachyantha OB01G45570 I
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I
OMERI01G33900 Oryza meridionalis OMERI01G33900 N
ONIVA10G04750 Oryza nivara ONIVA10G04750 N
OPUNC05G16800 Oryza punctata OPUNC05G16800 I
ORUFI01G40130 Oryza rufipogon ORUFI01G40130 N
MYB3R-2 Oryza sativa OS01G0841500 I
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I
Pm002704 Prunus mume Pm002704 I
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I
29794.m003447 Ricinus communis 29794.m003447 I
29846.m000184 Ricinus communis 29846.m000184 I
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I
Si000842m.g Setaria italica Si000842m.g I
Si021484m.g Setaria italica Si021484m.g I
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I
Sb03g039470 Sorghum bicolor Sb03g039470 I
TCM_021936 Theobroma cacao TCM_021936 I
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I
TRIUR3_29290 Triticum urartu TRIUR3_29290 I
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I
GRMZM2G081919 Zea mays GRMZM2G081919 I