SCL5 (Arabidopsis lyrata)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 fgenesh2_kg.1__4145__AT1G50600.1 T200120_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4145__AT1G50600.1 GRAS 131 501

Links

Other GRAS family TFs
Other Arabidopsis lyrata TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00088p00161000 Amborella trichopoda AMTR_s00088p00161000 N 0.710
Aquca_028_00248 Aquilegia coerulea Aquca_028_00248 N 0.707
Aquca_005_00234 Aquilegia coerulea Aquca_005_00234 N 0.748
PAT1 Arabidopsis lyrata scaffold_801100.1 N 0.705
SCL5 Arabidopsis thaliana AT1G50600 N 0.995
PAT1 Arabidopsis thaliana AT5G48150 N 0.713
Bostr.5224s0004 Boechera stricta Bostr.5224s0004 N 0.710
Bostr.26675s0117 Boechera stricta Bostr.26675s0117 N 0.992
Bo5g079990 Brassica oleracea Bo5g079990 N 0.770
Bo6g022330 Brassica oleracea Bo6g022330 N 0.986
Bra026077 Brassica rapa Bra026077 N 0.783
Bra018860 Brassica rapa Bra018860 N 0.986
PK15082.1 Cannabis sativa PK15082.1 N 0.726
Cagra.2766s0005 Capsella grandiflora Cagra.2766s0005 N 0.710
Cagra.7055s0004 Capsella grandiflora Cagra.7055s0004 N 0.976
Carubv10008830m.g Capsella rubella Carubv10008830m.g N 0.976
Carubv10026289m.g Capsella rubella Carubv10026289m.g N 0.710
evm.TU.supercontig_136.17 Carica papaya evm.TU.supercontig_136.17 N 0.737
evm.TU.supercontig_12.194 Carica papaya evm.TU.supercontig_12.194 N 0.775
Ca_09786 Cicer arietinum Ca_09786 N 0.724
Cla001429 Citrullus lanatus Cla001429 N 0.710
Ciclev10014845m.g Citrus clementina Ciclev10014845m.g N 0.713
Ciclev10007927m.g Citrus clementina Ciclev10007927m.g N 0.724
orange1.1g009376m.g Citrus sinensis orange1.1g009376m.g N 0.713
Cucsa.120390 Cucumis sativus Cucsa.120390 N 0.710
Eucgr.A01051 Eucalyptus grandis Eucgr.A01051 N 0.715
Eucgr.F03523 Eucalyptus grandis Eucgr.F03523 N 0.713
Thhalv10011379m.g Eutrema salsugineum Thhalv10011379m.g N 0.973
gene21592-v1.0-hybrid Fragaria vesca gene21592-v1.0-hybrid N 0.743
gene03551-v1.0-hybrid Fragaria vesca gene03551-v1.0-hybrid N 0.734
GLYMA02G46730 Glycine max GLYMA02G46730 N 0.707
GLYMA14G01960 Glycine max GLYMA14G01960 N 0.702
GLYMA14G01020 Glycine max GLYMA14G01020 N 0.724
GLYMA02G47640 Glycine max GLYMA02G47640 N 0.721
Gorai.002G096300 Gossypium raimondii Gorai.002G096300 N 0.740
Gorai.007G167000 Gossypium raimondii Gorai.007G167000 N 0.729
Gorai.009G446100 Gossypium raimondii Gorai.009G446100 N 0.740
Gorai.001G192800 Gossypium raimondii Gorai.001G192800 N 0.729
Lus10012323.g Linum usitatissimum Lus10012323.g N 0.700
Lus10016596.g Linum usitatissimum Lus10016596.g N 0.707
chr6.LjT11E14.20.nc Lotus japonicus chr6.LjT11E14.20.nc N 0.705
LjSGA_018703.2 Lotus japonicus LjSGA_018703.2 N 0.762
MDP0000152670 Malus domestica MDP0000152670 N 0.740
MDP0000205236 Malus domestica MDP0000205236 N 0.724
MDP0000284679 Malus domestica MDP0000284679 N 0.724
MDP0000804652 Malus domestica MDP0000804652 N 0.740
cassava10826.m1 Manihot esculenta cassava10826.m1 N 0.756
cassava34699.m1 Manihot esculenta cassava34699.m1 N 0.759
MTR_5g097480 Medicago truncatula MTR_5g097480 N 0.724
PDK_20s1411471g003 Phoenix dactylifera PDK_20s1411471g003 N 0.713
SCL5 Populus trichocarpa POPTR_0001s37270 N 0.729
POPTR_0014s16230 Populus trichocarpa POPTR_0014s16230 N 0.737
Pm015021 Prunus mume Pm015021 N 0.740
Pm012019 Prunus mume Pm012019 N 0.748
PRUPE_ppa003702mg Prunus persica PRUPE_ppa003702mg N 0.740
PRUPE_ppa004136mg Prunus persica PRUPE_ppa004136mg N 0.710
27613.m000642 Ricinus communis 27613.m000642 N 0.753
29949.m000124 Ricinus communis 29949.m000124 N 0.725
SapurV1A.0054s0160 Salix purpurea SapurV1A.0054s0160 N 0.740
SapurV1A.0030s0420 Salix purpurea SapurV1A.0030s0420 N 0.721
Solyc07g065270.1 Solanum lycopersicum Solyc07g065270.1 N 0.702
Solyc07g047950.1 Solanum lycopersicum Solyc07g047950.1 N 0.713
PGSC0003DMG400006132 Solanum tuberosum PGSC0003DMG400006132 N 0.715
TCM_002319 Theobroma cacao TCM_002319 N 0.740
TCM_030733 Theobroma cacao TCM_030733 N 0.770
VIT_12s0057g00560 Vitis vinifera VIT_12s0057g00560 N 0.729
SCL5 Vitis vinifera VIT_19s0090g01740 N 0.729