Thhalv10020431m.g (Eutrema salsugineum)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Thhalv10020431m.g T203210_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.873 0.873
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10020431m GRAS 179 544

Links

Other GRAS family TFs
Other Eutrema salsugineum TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.840
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.774
RGL3 Arabidopsis thaliana AT5G17490 I 0.779
RGL2 Arabidopsis thaliana AT3G03450 D 0.871
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.777
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.876
Bo5g149920 Brassica oleracea Bo5g149920 I 0.860
Bo9g160170 Brassica oleracea Bo9g160170 I 0.793
Bra013973 Brassica rapa Bra013973 I 0.790
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.771
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.857
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.872
Carubv10003592m.g Capsella rubella Carubv10003592m.g I 0.760
evm.TU.supercontig_116.43 Carica papaya evm.TU.supercontig_116.43 I 0.715
Eucgr.J01594 Eucalyptus grandis Eucgr.J01594 I 0.709
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.765
GLYMA18G04500 Glycine max GLYMA18G04500 I 0.719
GLYMA11G33720 Glycine max GLYMA11G33720 I 0.708
Lus10033583.g Linum usitatissimum Lus10033583.g N 0.701
LjT15P09.140.nc Lotus japonicus LjT15P09.140.nc N 0.713
LjT40K11.90.nc Lotus japonicus LjT40K11.90.nc N 0.713
MDP0000669451 Malus domestica MDP0000669451 I 0.715
cassava6237.valid.m1 Manihot esculenta cassava6237.valid.m1 I 0.714
POPTR_0005s14540 Populus trichocarpa POPTR_0005s14540 I 0.717
POPTR_0004s08890 Populus trichocarpa POPTR_0004s08890 I 0.705
Pm014329 Prunus mume Pm014329 I 0.705
PRUPE_ppa003206mg Prunus persica PRUPE_ppa003206mg I 0.712
VIT_14s0006g00640 Vitis vinifera VIT_14s0006g00640 I 0.708