CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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mgf006858m
(
Mimulus guttatus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
mgf006858m
T227695_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RLT1
M02038_2.00
Arabidopsis thaliana
NDHTCWWN
NWWGADHN
PBM
Weirauch et al.(2014)
pTH5432
0.824
0.860
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf006858m
Homeodomain
23
79
RPKRQMKTPFQLEVLEKTYSMEMYPSEATRAELSVKLGLTDRQLQMWFCHRRLKDKK
Links
Other
Homeodomain
family TFs
Other
Mimulus guttatus
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_014_00610
Aquilegia coerulea
Aquca_014_00610
I
0.000
scaffold_603934.1
Arabidopsis lyrata
scaffold_603934.1
N
0.000
AT4G03250
Arabidopsis thaliana
AT4G03250
I
0.000
Bostr.2983s0116
Boechera stricta
Bostr.2983s0116
I
0.000
Bo9g006410
Brassica oleracea
Bo9g006410
N
0.000
Bo9g006450
Brassica oleracea
Bo9g006450
I
0.000
Bra034196
Brassica rapa
Bra034196
I
0.000
BTMF_0000474601
Brugia timori
BTMF_0000474601
N
0.000
PK25011.1
Cannabis sativa
PK25011.1
D
0.000
Cagra.2552s0003
Capsella grandiflora
Cagra.2552s0003
I
0.000
Carubv10002996m.g
Capsella rubella
Carubv10002996m.g
I
0.000
ENSDNOG00000038094
Dasypus novemcinctus
ENSDNOG00000038094
N
0.000
D915_07707
Fasciola hepatica
D915_07707
N
0.000
gene14635-v1.0-hybrid
Fragaria vesca
gene14635-v1.0-hybrid
N
0.000
GLYMA08G38930
Glycine max
GLYMA08G38930
N
0.000
GLYMA08G41330
Glycine max
GLYMA08G41330
I
0.000
GLYMA18G14910
Glycine max
GLYMA18G14910
I
0.000
Gorai.013G254100
Gossypium raimondii
Gorai.013G254100
I
0.000
Gorai.004G014700
Gossypium raimondii
Gorai.004G014700
I
0.000
Gorai.001G134800
Gossypium raimondii
Gorai.001G134800
I
0.000
LjSGA_012738.1
Lotus japonicus
LjSGA_012738.1
N
0.000
cassava31027.valid.m1
Manihot esculenta
cassava31027.valid.m1
N
0.000
mgf007720m
Mimulus guttatus
mgf007720m
I
0.000
GSMUA_Achr8G27210_001
Musa acuminata
GSMUA_Achr8G27210_001
N
0.000
GSMUA_Achr9G06610_001
Musa acuminata
GSMUA_Achr9G06610_001
N
0.000
OBART05G11630
Oryza barthii
OBART05G11630
N
0.000
OBART01G26120
Oryza barthii
OBART01G26120
N
0.000
OB01G35260
Oryza brachyantha
OB01G35260
N
0.000
BGIOSGA019617
Oryza indica
BGIOSGA019617
N
0.000
OLONG_014924
Oryza longistaminata
OLONG_014924
N
0.000
ONIVA05G12010
Oryza nivara
ONIVA05G12010
N
0.000
ORUFI05G12600
Oryza rufipogon
ORUFI05G12600
N
0.000
PDK_20s1551001g001
Phoenix dactylifera
PDK_20s1551001g001
I
0.000
POPTR_0009s07600
Populus trichocarpa
POPTR_0009s07600
I
0.000
POPTR_0004s04840
Populus trichocarpa
POPTR_0004s04840
N
0.000
POPTR_0001s28350
Populus trichocarpa
POPTR_0001s28350
I
0.000
Pm012761
Prunus mume
Pm012761
N
0.000
SapurV1A.0042s0570
Salix purpurea
SapurV1A.0042s0570
I
0.000
SapurV1A.0106s0340
Salix purpurea
SapurV1A.0106s0340
I
0.000
PGSC0003DMG400004714
Solanum tuberosum
PGSC0003DMG400004714
I
0.000
TCM_040945
Theobroma cacao
TCM_040945
I
0.000
TCM_008214
Theobroma cacao
TCM_008214
I
0.647
VIT_06s0009g03530
Vitis vinifera
VIT_06s0009g03530
I
0.000