Carubv10004175m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10004175m.g T228284_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MTR_2g038000
M02141_2.00 		Medicago truncatula
NDNYWNNNNN
NNNNNWRNHN		 PBM
Weirauch et al.(2014)
pTH6339 		0.673 0.709
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10004175m Homeodomain 454 508

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14972 Aegilops tauschii F775_14972 N
AMTR_s00093p00164790 Amborella trichopoda AMTR_s00093p00164790 N
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N
WIP3 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000684 N
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N
WIP3 Arabidopsis thaliana AT1G08290 N
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N
BRADI2G23870 Brachypodium distachyon BRADI2G23870 N
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N
BRADI4G27770 Brachypodium distachyon BRADI4G27770 N
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N
Bo5g008880 Brassica oleracea Bo5g008880 N
Bo5g081360 Brassica oleracea Bo5g081360 N
Bo8g112550 Brassica oleracea Bo8g112550 N
Bra018638 Brassica rapa Bra018638 N
Bra031621 Brassica rapa Bra031621 N
PK05257.1 Cannabis sativa PK05257.1 N
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N
Carubv10009617m.g Capsella rubella Carubv10009617m.g N
Carubv10012266m.g Capsella rubella Carubv10012266m.g N
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N
Ca_07051 Cicer arietinum Ca_07051 N
Ca_16482 Cicer arietinum Ca_16482 N
Ca_27078 Cicer arietinum Ca_27078 N
Cla000184 Citrullus lanatus Cla000184 N
Cla015481 Citrullus lanatus Cla015481 N
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N
orange1.1g037234m.g Citrus sinensis orange1.1g037234m.g N
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N
Cucsa.050260 Cucumis sativus Cucsa.050260 N
Cucsa.065460 Cucumis sativus Cucsa.065460 N
Cucsa.199850 Cucumis sativus Cucsa.199850 N
Eucgr.B03047 Eucalyptus grandis Eucgr.B03047 N
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N
GLYMA08G16390 Glycine max GLYMA08G16390 N
GLYMA11G19060 Glycine max GLYMA11G19060 N
GLYMA12G09400 Glycine max GLYMA12G09400 N
GLYMA12G30930 Glycine max GLYMA12G30930 N
GLYMA12G36660 Glycine max GLYMA12G36660 N
GLYMA13G01720 Glycine max GLYMA13G01720 N
GLYMA13G27371 Glycine max GLYMA13G27371 N
GLYMA13G39370 Glycine max GLYMA13G39370 N
GLYMA14G35140 Glycine max GLYMA14G35140 N
GLYMA15G42870 Glycine max GLYMA15G42870 N
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N
MLOC_2787 Hordeum vulgare MLOC_2787 N
MLOC_54308 Hordeum vulgare MLOC_54308 N
LPERR08G16620 Leersia perrieri LPERR08G16620 N
LPERR09G03450 Leersia perrieri LPERR09G03450 N
LPERR09G10700 Leersia perrieri LPERR09G10700 N
Lus10004887.g Linum usitatissimum Lus10004887.g N
Lus10020597.g Linum usitatissimum Lus10020597.g N
Lus10029525.g Linum usitatissimum Lus10029525.g N
Lus10033454.g Linum usitatissimum Lus10033454.g N
Lus10039613.g Linum usitatissimum Lus10039613.g N
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N
MDP0000131949 Malus domestica MDP0000131949 N
MDP0000300013 Malus domestica MDP0000300013 N
MDP0000573922 Malus domestica MDP0000573922 N
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N
cassava16214.m1 Manihot esculenta cassava16214.m1 N
cassava39829.m1 Manihot esculenta cassava39829.m1 N
cassava44390.m1 Manihot esculenta cassava44390.m1 N
mgf022319m Mimulus guttatus mgf022319m N
mgf022981m Mimulus guttatus mgf022981m N
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N
GSMUA_Achr6G01410_001 Musa acuminata GSMUA_Achr6G01410_001 N
GSMUA_Achr8G25650_001 Musa acuminata GSMUA_Achr8G25650_001 N
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N
OBART08G19670 Oryza barthii OBART08G19670 N
OBART09G03640 Oryza barthii OBART09G03640 N
OB05G26090 Oryza brachyantha OB05G26090 N
OB08G26650 Oryza brachyantha OB08G26650 N
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N
ORGLA09G0176200 Oryza glaberrima ORGLA09G0176200 N
OGLUM05G19360 Oryza glumaepatula OGLUM05G19360 N
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N
OGLUM09G04400 Oryza glumaepatula OGLUM09G04400 N
OGLUM09G05550 Oryza glumaepatula OGLUM09G05550 N
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N
BGIOSGA030081 Oryza indica BGIOSGA030081 N
BGIOSGA030484 Oryza indica BGIOSGA030484 N
BGIOSGA031001 Oryza indica BGIOSGA031001 N
OMERI08G16450 Oryza meridionalis OMERI08G16450 N
OMERI09G02890 Oryza meridionalis OMERI09G02890 N
OMERI09G03940 Oryza meridionalis OMERI09G03940 N
OMERI09G11270 Oryza meridionalis OMERI09G11270 N
ONIVA02G14580 Oryza nivara ONIVA02G14580 N
ONIVA08G08420 Oryza nivara ONIVA08G08420 N
ONIVA08G21960 Oryza nivara ONIVA08G21960 N
ONIVA09G15100 Oryza nivara ONIVA09G15100 N
OPUNC08G17810 Oryza punctata OPUNC08G17810 N
OPUNC09G03280 Oryza punctata OPUNC09G03280 N
OPUNC09G04260 Oryza punctata OPUNC09G04260 N
OPUNC09G12930 Oryza punctata OPUNC09G12930 N
ORUFI09G04060 Oryza rufipogon ORUFI09G04060 N
ORUFI09G05390 Oryza rufipogon ORUFI09G05390 N
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N
OS08G0504000 Oryza sativa OS08G0504000 N
OS09G0307400 Oryza sativa OS09G0307400 N
OS09G0485600 Oryza sativa OS09G0485600 N
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N
Pavir.Ba03009 Panicum virgatum Pavir.Ba03009 N
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N
Pm001374 Prunus mume Pm001374 N
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N
29908.m006047 Ricinus communis 29908.m006047 N
30055.m001542 Ricinus communis 30055.m001542 N
30061.m000294 Ricinus communis 30061.m000294 N
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N
Si013819m.g Setaria italica Si013819m.g N
Si029897m.g Setaria italica Si029897m.g N
Si030360m.g Setaria italica Si030360m.g N
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N
Sb02g020840 Sorghum bicolor Sb02g020840 N
Sb02g028220 Sorghum bicolor Sb02g028220 N
Sb07g028010 Sorghum bicolor Sb07g028010 N
TCM_005892 Theobroma cacao TCM_005892 N
TCM_034881 Theobroma cacao TCM_034881 N
TCM_041441 Theobroma cacao TCM_041441 N
Traes_5BL_46BDE583B Triticum aestivum Traes_5BL_46BDE583B N
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N
Traes_5DL_98FA0887C Triticum aestivum Traes_5DL_98FA0887C N
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N
TRIUR3_30490 Triticum urartu TRIUR3_30490 N
TRIUR3_30537 Triticum urartu TRIUR3_30537 N
WIP3 Vitis vinifera VIT_06s0080g00270 N
TT1 Vitis vinifera VIT_18s0001g05860 N
GRMZM2G000836 Zea mays GRMZM2G000836 N
GRMZM2G071101 Zea mays GRMZM2G071101 N
GRMZM2G084014 Zea mays GRMZM2G084014 N
GRMZM2G150011 Zea mays GRMZM2G150011 N
GRMZM2G445684 Zea mays GRMZM2G445684 N