29727.m000472 (Ricinus communis)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 29727.m000472 T250441_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASIL2
M06973_2.00 		Arabidopsis thaliana
TCRCCGGARAH
DTYTCCGGYGA		 Dap-seq
OMalley et al.(2016)
At3g14180_col 		0.823 0.718
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29727.m000472 MADF 168 245

Links

Other MADF family TFs
Other Ricinus communis TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00263040 Amborella trichopoda AMTR_s00007p00263040 N 0.908
AMTR_s00021p00065350 Amborella trichopoda AMTR_s00021p00065350 I 0.827
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I 0.896
Aquca_020_00550 Aquilegia coerulea Aquca_020_00550 I 0.847
Aquca_021_00219 Aquilegia coerulea Aquca_021_00219 I 0.832
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I 0.897
ASIL1 Arabidopsis lyrata fgenesh2_kg.1__4489__AT1G54060.1 I 0.844
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I 0.823
ASIL2 Arabidopsis thaliana AT3G14180 D 0.823
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I 0.844
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I 0.823
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I 0.896
Bo6g050870 Brassica oleracea Bo6g050870 I 0.827
Bo6g033010 Brassica oleracea Bo6g033010 I 0.816
Bo3g065930 Brassica oleracea Bo3g065930 I 0.824
Bra014370 Brassica rapa Bra014370 I 0.843
PK22475.1 Cannabis sativa PK22475.1 N 0.955
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I 0.829
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I 0.841
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I 0.823
Carubv10009310m.g Capsella rubella Carubv10009310m.g I 0.829
Carubv10015321m.g Capsella rubella Carubv10015321m.g I 0.823
Carubv10015798m.g Capsella rubella Carubv10015798m.g I 0.825
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.843
Cla015773 Citrullus lanatus Cla015773 I 0.900
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I 0.920
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I 0.920
Cucsa.359990 Cucumis sativus Cucsa.359990 I 0.900
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I 0.849
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I 0.823
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I 0.905
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N 0.826
GLYMA16G01370 Glycine max GLYMA16G01370 I 0.936
GLYMA07G04790 Glycine max GLYMA07G04790 I 0.900
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I 0.923
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I 0.914
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I 0.886
MDP0000943251 Malus domestica MDP0000943251 N 0.823
MDP0000281471 Malus domestica MDP0000281471 I 0.911
MDP0000255104 Malus domestica MDP0000255104 I 0.911
MDP0000097759 Malus domestica MDP0000097759 N 0.840
cassava34877.m1 Manihot esculenta cassava34877.m1 I 0.923
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I 0.964
cassava47424.m1 Manihot esculenta cassava47424.m1 I 0.952
MTR_8g022290 Medicago truncatula MTR_8g022290 I 0.886
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.859
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.873
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.823
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N 0.877
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I 0.906
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N 0.947
Pm013209 Prunus mume Pm013209 I 0.902
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.838
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I 0.902
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I 0.888
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N 0.947
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N 0.947
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I 0.900
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.827
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I 0.900
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.827
TCM_029209 Theobroma cacao TCM_029209 I 0.958
TCM_042467 Theobroma cacao TCM_042467 N 0.816
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I 0.843
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N 0.959