Pavir.J33948 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.J33948 T250831_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT3G58630
M06976_2.00 		Arabidopsis thaliana
HNTCGCCGGARWHDN
NHDWYTCCGGCGAND		 Dap-seq
OMalley et al.(2016)
AT3G58630_col_a 		0.838 0.662
AT3G58630
M06977_2.00 		Arabidopsis thaliana
NNTCGCCGGARWHDN
NHDWYTCCGGCGANN		 Dap-seq
OMalley et al.(2016)
AT3G58630_colamp_a 		0.838 0.662
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33948.1.p MADF 47 124

Links

Other MADF family TFs
Other Panicum virgatum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_14336 Aegilops tauschii F775_14336 N
AMTR_s00077p00190160 Amborella trichopoda AMTR_s00077p00190160 N
Aquca_004_00566 Aquilegia coerulea Aquca_004_00566 N
SCR Arabidopsis lyrata fgenesh2_kg.5__1811__AT3G54220.1 N
SCR Arabidopsis thaliana AT3G54220 N
Bostr.0697s0034 Boechera stricta Bostr.0697s0034 N
Bo8g083500 Brassica oleracea Bo8g083500 N
Bra007056 Brassica rapa Bra007056 N
PK22310.1 Cannabis sativa PK22310.1 N
Cagra.0562s0013 Capsella grandiflora Cagra.0562s0013 N
Carubv10016802m.g Capsella rubella Carubv10016802m.g N
evm.TU.supercontig_1018.1 Carica papaya evm.TU.supercontig_1018.1 N
Ca_09530 Cicer arietinum Ca_09530 N
Cla012346 Citrullus lanatus Cla012346 N
Ciclev10011085m.g Citrus clementina Ciclev10011085m.g N
orange1.1g014896m.g Citrus sinensis orange1.1g014896m.g N
Cucsa.002880 Cucumis sativus Cucsa.002880 N
Eucgr.K01320 Eucalyptus grandis Eucgr.K01320 N
Thhalv10010179m.g Eutrema salsugineum Thhalv10010179m.g N
gene13644-v1.0-hybrid Fragaria vesca gene13644-v1.0-hybrid N
GLYMA09G40620 Glycine max GLYMA09G40620 N
GLYMA18G45220 Glycine max GLYMA18G45220 N
Gorai.006G236200 Gossypium raimondii Gorai.006G236200 N
Gorai.005G001300 Gossypium raimondii Gorai.005G001300 N
MLOC_64716 Hordeum vulgare MLOC_64716 N
LPERR12G01340 Leersia perrieri LPERR12G01340 N
LPERR11G01220 Leersia perrieri LPERR11G01220 N
Lus10040734.g Linum usitatissimum Lus10040734.g N
Lus10016496.g Linum usitatissimum Lus10016496.g N
chr1.CM1255.400.nc Lotus japonicus chr1.CM1255.400.nc N
MDP0000397638 Malus domestica MDP0000397638 N
cassava25218.valid.m1 Manihot esculenta cassava25218.valid.m1 N
cassava36326.valid.m1 Manihot esculenta cassava36326.valid.m1 N
MTR_7g074650 Medicago truncatula MTR_7g074650 N
mgf012242m Mimulus guttatus mgf012242m N
GSMUA_Achr8G09400_001 Musa acuminata GSMUA_Achr8G09400_001 N
OBART12G01190 Oryza barthii OBART12G01190 N
OBART11G01460 Oryza barthii OBART11G01460 N
OB07G24850 Oryza brachyantha OB07G24850 N
ORGLA11G0013300 Oryza glaberrima ORGLA11G0013300 N
ORGLA12G0010300 Oryza glaberrima ORGLA12G0010300 N
OGLUM11G01180 Oryza glumaepatula OGLUM11G01180 N
BGIOSGA036912 Oryza indica BGIOSGA036912 N
BGIOSGA034703 Oryza indica BGIOSGA034703 N
OLONG_010321 Oryza longistaminata OLONG_010321 N
ORUFI12G01460 Oryza rufipogon ORUFI12G01460 N
ORUFI11G01380 Oryza rufipogon ORUFI11G01380 N
SCR1 Oryza sativa OS11G0124300 N
OS07G0567700 Oryza sativa OS07G0567700 N
SCR2 Oryza sativa OS12G0122000 N
Pavir.J21588 Panicum virgatum Pavir.J21588 N
Pavir.J08573 Panicum virgatum Pavir.J08573 N
Pavir.Ha01915 Panicum virgatum Pavir.Ha01915 N
POPTR_0006s11500 Populus trichocarpa POPTR_0006s11500 N
Pm002956 Prunus mume Pm002956 N
PRUPE_ppa001546mg Prunus persica PRUPE_ppa001546mg N
30073.m002204 Ricinus communis 30073.m002204 N
SapurV1A.0208s0090 Salix purpurea SapurV1A.0208s0090 N
SapurV1A.1165s0100 Salix purpurea SapurV1A.1165s0100 N
SELMODRAFT_432115 Selaginella moellendorffii SELMODRAFT_432115 N
Solyc10g074680.1 Solanum lycopersicum Solyc10g074680.1 N
PGSC0003DMG400016833 Solanum tuberosum PGSC0003DMG400016833 N
Sb05g001500 Sorghum bicolor Sb05g001500 N
TCM_017746 Theobroma cacao TCM_017746 N
Traes_5DL_3EC609F62 Triticum aestivum Traes_5DL_3EC609F62 N
Traes_5BL_C02570726 Triticum aestivum Traes_5BL_C02570726 N
Traes_4DS_2CE9E3235 Triticum aestivum Traes_4DS_2CE9E3235 N
Traes_4BS_A05D3DC53 Triticum aestivum Traes_4BS_A05D3DC53 N
TRIUR3_28106 Triticum urartu TRIUR3_28106 N
SCR Vitis vinifera VIT_08s0056g00050 N
GRMZM2G131516 Zea mays GRMZM2G131516 N
GRMZM2G015080 Zea mays GRMZM2G015080 N