TCM_042799 (Theobroma cacao)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 TCM_042799 T256486_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY18184 MADS box 10 58

Links

Other MADS box family TFs
Other Theobroma cacao TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g078450 Brassica oleracea Bo9g078450 I 0.000
Bo2g104810 Brassica oleracea Bo2g104810 I 0.000
Bra018490 Brassica rapa Bra018490 I 0.000
Bra029469 Brassica rapa Bra029469 I 0.000
Ciclev10013728m.g Citrus clementina Ciclev10013728m.g I 0.792
Ciclev10006519m.g Citrus clementina Ciclev10006519m.g I 0.792
Thhalv10022373m.g Eutrema salsugineum Thhalv10022373m.g I 0.000
gene22967-v1.0-hybrid Fragaria vesca gene22967-v1.0-hybrid I 0.771
gene22916-v1.0-hybrid Fragaria vesca gene22916-v1.0-hybrid I 0.708
gene18029-v1.0-hybrid Fragaria vesca gene18029-v1.0-hybrid I 0.792
GLYMA10G28320 Glycine max GLYMA10G28320 N 0.000
LjSGA_024860.1 Lotus japonicus LjSGA_024860.1 I 0.000
chr6.LjT19B22.120.nd Lotus japonicus chr6.LjT19B22.120.nd I 0.000
cassava19828.m1 Manihot esculenta cassava19828.m1 I 0.792
MTR_7g011950 Medicago truncatula MTR_7g011950 N 0.000
MTR_5g047580 Medicago truncatula MTR_5g047580 N 0.000
MTR_4g028720 Medicago truncatula MTR_4g028720 N 0.000
MTR_1g090783 Medicago truncatula MTR_1g090783 N 0.000
MTR_1g090697 Medicago truncatula MTR_1g090697 N 0.000
MTR_1g084950 Medicago truncatula MTR_1g084950 N 0.000
MTR_1g077320 Medicago truncatula MTR_1g077320 N 0.000
POPTR_0013s01880 Populus trichocarpa POPTR_0013s01880 I 0.792
POPTR_0005s00420 Populus trichocarpa POPTR_0005s00420 I 0.750
30128.m008984 Ricinus communis 30128.m008984 I 0.812
SapurV1A.0066s0310 Salix purpurea SapurV1A.0066s0310 I 0.787
TCM_026842 Theobroma cacao TCM_026842 I 0.792
VIT_14s0060g00300 Vitis vinifera VIT_14s0060g00300 I 0.792