evm.TU.supercontig_265.1 (Carica papaya)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 evm.TU.supercontig_265.1 T258212_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.761 0.761
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_265.1 MADS box 10 56

Links

Other MADS box family TFs
Other Carica papaya TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02335 Aegilops tauschii F775_02335 N 0.000
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.000
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.000
LBD1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000623 N 0.000
LBD11 Arabidopsis lyrata fgenesh2_kg.4__820__AT2G28500.1 N 0.000
LBD11 Arabidopsis thaliana AT2G28500 N 0.000
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.000
Bo01039s010 Brassica oleracea Bo01039s010 N 0.000
Bo3g040220 Brassica oleracea Bo3g040220 N 0.000
Bo4g165420 Brassica oleracea Bo4g165420 N 0.000
Bo5g008590 Brassica oleracea Bo5g008590 N 0.000
Bra000491 Brassica rapa Bra000491 N 0.000
Bra011942 Brassica rapa Bra011942 N 0.000
Bra018675 Brassica rapa Bra018675 N 0.000
Bra035698 Brassica rapa Bra035698 N 0.000
PK17019.1 Cannabis sativa PK17019.1 I 0.000
PK23777.1 Cannabis sativa PK23777.1 I 0.000
PK27389.1 Cannabis sativa PK27389.1 I 0.000
Cagra.1671s0410 Capsella grandiflora Cagra.1671s0410 N 0.000
Cagra.9128s0007 Capsella grandiflora Cagra.9128s0007 N 0.000
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.000
Carubv10023989m.g Capsella rubella Carubv10023989m.g N 0.000
evm.TU.supercontig_53.26 Carica papaya evm.TU.supercontig_53.26 N 0.000
Ca_04287 Cicer arietinum Ca_04287 I 0.000
Ca_14605 Cicer arietinum Ca_14605 I 0.000
Cla000556 Citrullus lanatus Cla000556 I 0.000
Cla005133 Citrullus lanatus Cla005133 N 0.000
Cla005134 Citrullus lanatus Cla005134 N 0.000
Cla020379 Citrullus lanatus Cla020379 I 0.000
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.000
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.000
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.000
Ciclev10033956m.g Citrus clementina Ciclev10033956m.g I 0.000
orange1.1g026556m.g Citrus sinensis orange1.1g026556m.g I 0.000
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.000
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.000
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.000
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.000
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.000
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.000
Eucgr.E02410 Eucalyptus grandis Eucgr.E02410 N 0.000
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.000
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.000
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.000
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.000
gene25294-v1.0-hybrid Fragaria vesca gene25294-v1.0-hybrid I 0.000
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.000
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.000
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.000
GLYMA13G40370 Glycine max GLYMA13G40370 I 0.000
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.000
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.000
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.000
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.000
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.000
Gorai.010G203800 Gossypium raimondii Gorai.010G203800 I 0.000
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.000
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.000
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.000
MLOC_68570 Hordeum vulgare MLOC_68570 N 0.000
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.000
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.000
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.000
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.000
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.000
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.000
MDP0000123013 Malus domestica MDP0000123013 I 0.000
MDP0000151784 Malus domestica MDP0000151784 I 0.000
MDP0000218986 Malus domestica MDP0000218986 I 0.000
MDP0000318244 Malus domestica MDP0000318244 I 0.000
MDP0000319331 Malus domestica MDP0000319331 I 0.000
MDP0000822986 Malus domestica MDP0000822986 I 0.000
MDP0000879799 Malus domestica MDP0000879799 N 0.000
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.000
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.000
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.000
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.000
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.000
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.000
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.000
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.000
mgf015666m Mimulus guttatus mgf015666m N 0.000
mgf022524m Mimulus guttatus mgf022524m N 0.000
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.000
GSMUA_Achr6G33070_001 Musa acuminata GSMUA_Achr6G33070_001 I 0.000
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.000
GSMUA_Achr8G09700_001 Musa acuminata GSMUA_Achr8G09700_001 N 0.000
OBART03G13260 Oryza barthii OBART03G13260 N 0.000
OBART05G01640 Oryza barthii OBART05G01640 N 0.000
OB03G23270 Oryza brachyantha OB03G23270 N 0.000
OB05G11740 Oryza brachyantha OB05G11740 I 0.000
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.000
ORGLA05G0016500 Oryza glaberrima ORGLA05G0016500 N 0.000
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.000
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.000
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.000
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.000
OMERI05G01740 Oryza meridionalis OMERI05G01740 N 0.000
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.000
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.000
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.000
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.000
OS03G0287400 Oryza sativa OS03G0287400 N 0.000
Pavir.Ca00718 Panicum virgatum Pavir.Ca00718 I 0.000
Pavir.Ia03612 Panicum virgatum Pavir.Ia03612 N 0.000
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.000
Pavir.J04684 Panicum virgatum Pavir.J04684 I 0.000
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.000
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.000
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.000
Pm000938 Prunus mume Pm000938 I 0.000
Pm018585 Prunus mume Pm018585 I 0.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.000
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.000
30111.m000703 Ricinus communis 30111.m000703 I 0.000
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.000
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.000
Si024430m.g Setaria italica Si024430m.g N 0.000
Si037280m.g Setaria italica Si037280m.g N 0.000
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.000
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.000
Solyc06g075330.1 Solanum lycopersicum Solyc06g075330.1 N 0.000
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.000
PGSC0003DMG400007503 Solanum tuberosum PGSC0003DMG400007503 I 0.000
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.000
Sb01g038650 Sorghum bicolor Sb01g038650 N 0.000
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.000
TCM_041094 Theobroma cacao TCM_041094 I 0.000
TCM_043081 Theobroma cacao TCM_043081 I 0.000
Traes_1AS_26CB95294 Triticum aestivum Traes_1AS_26CB95294 N 0.000
Traes_1BS_CE38938A8 Triticum aestivum Traes_1BS_CE38938A8 N 0.000
Traes_1DS_A31FB6CB2 Triticum aestivum Traes_1DS_A31FB6CB2 N 0.000
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.000
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.000
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.000
VIT_13s0019g03710 Vitis vinifera VIT_13s0019g03710 N 0.000
VIT_13s0019g03750 Vitis vinifera VIT_13s0019g03750 N 0.000
VIT_13s0019g03760 Vitis vinifera VIT_13s0019g03760 N 0.000
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.000
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.000
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.000
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.000
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.000
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.000
GRMZM2G021095 Zea mays GRMZM2G021095 N 0.000
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.000
GRMZM2G165805 Zea mays GRMZM2G165805 N 0.000