Lus10034464.g (Linum usitatissimum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Lus10034464.g T258617_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL65
M10901_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL65_01 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10034464 MADS box 10 57

Links

Other MADS box family TFs
Other Linum usitatissimum TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13266 Aegilops tauschii F775_13266 I 0.870
AMTR_s00010p00264750 Amborella trichopoda AMTR_s00010p00264750 I 0.848
Aquca_002_00641 Aquilegia coerulea Aquca_002_00641 I 0.812
AGL30 Arabidopsis lyrata Al_scaffold_0005_228 I 0.717
AGL66 Arabidopsis lyrata fgenesh2_kg.2__2091__AT1G77980.1 I 0.708
AGL65 Arabidopsis lyrata fgenesh2_kg.1__2055__AT1G18750.1 I 0.833
AGL65 Arabidopsis thaliana AT1G18750 D 0.833
AGL66 Arabidopsis thaliana AT1G77980 I 0.708
AGL30 Arabidopsis thaliana AT2G03060 I 0.717
Bostr.7128s0485 Boechera stricta Bostr.7128s0485 I 0.833
Bostr.0556s0119 Boechera stricta Bostr.0556s0119 I 0.739
BRADI4G11097 Brachypodium distachyon BRADI4G11097 I 0.826
Bo8g104060 Brassica oleracea Bo8g104060 I 0.833
Bo8g068060 Brassica oleracea Bo8g068060 I 0.833
Bra031049 Brassica rapa Bra031049 I 0.833
Bra025685 Brassica rapa Bra025685 I 0.851
Bra016544 Brassica rapa Bra016544 I 0.833
PK21701.1 Cannabis sativa PK21701.1 I 0.833
PK03147.1 Cannabis sativa PK03147.1 I 0.729
Cagra.0096s0037 Capsella grandiflora Cagra.0096s0037 I 0.708
Cagra.0534s0009 Capsella grandiflora Cagra.0534s0009 I 0.708
Cagra.4153s0004 Capsella grandiflora Cagra.4153s0004 I 0.771
Carubv10017440m.g Capsella rubella Carubv10017440m.g I 0.708
Carubv10021590m.g Capsella rubella Carubv10021590m.g I 0.708
Carubv10009419m.g Capsella rubella Carubv10009419m.g I 0.771
Ca_16376 Cicer arietinum Ca_16376 I 0.717
Cla010361 Citrullus lanatus Cla010361 I 0.761
Cla018884 Citrullus lanatus Cla018884 I 0.750
Ciclev10020575m.g Citrus clementina Ciclev10020575m.g I 0.875
Ciclev10031963m.g Citrus clementina Ciclev10031963m.g I 0.729
orange1.1g017511m.g Citrus sinensis orange1.1g017511m.g I 0.875
orange1.1g018825m.g Citrus sinensis orange1.1g018825m.g I 0.729
Cucsa.284960 Cucumis sativus Cucsa.284960 I 0.739
Cucsa.112840 Cucumis sativus Cucsa.112840 I 0.750
Eucgr.B00522 Eucalyptus grandis Eucgr.B00522 I 0.833
Thhalv10019839m.g Eutrema salsugineum Thhalv10019839m.g I 0.833
Thhalv10007954m.g Eutrema salsugineum Thhalv10007954m.g I 0.812
Thhalv10004409m.g Eutrema salsugineum Thhalv10004409m.g I 0.717
gene26028-v1.0-hybrid Fragaria vesca gene26028-v1.0-hybrid I 0.875
GLYMA17G10941 Glycine max GLYMA17G10941 I 0.826
Gorai.008G194100 Gossypium raimondii Gorai.008G194100 I 0.854
Gorai.001G074200 Gossypium raimondii Gorai.001G074200 I 0.857
MLOC_11474 Hordeum vulgare MLOC_11474 I 0.848
LPERR11G18320 Leersia perrieri LPERR11G18320 N 0.783
Lus10019089.g Linum usitatissimum Lus10019089.g I 0.958
Lus10026613.g Linum usitatissimum Lus10026613.g I 0.729
Lus10030450.g Linum usitatissimum Lus10030450.g I 0.729
chr4.CM0087.920.nd Lotus japonicus chr4.CM0087.920.nd I 0.851
MDP0000193129 Malus domestica MDP0000193129 I 0.854
MDP0000919323 Malus domestica MDP0000919323 I 0.733
MDP0000773068 Malus domestica MDP0000773068 I 0.733
MDP0000146231 Malus domestica MDP0000146231 I 0.717
MDP0000146415 Malus domestica MDP0000146415 I 0.733
cassava12018.valid.m1 Manihot esculenta cassava12018.valid.m1 I 0.729
cassava17346.m1 Manihot esculenta cassava17346.m1 I 0.729
cassava19791.m1 Manihot esculenta cassava19791.m1 I 0.896
cassava46162.m1 Manihot esculenta cassava46162.m1 I 0.896
MTR_4g108720 Medicago truncatula MTR_4g108720 I 0.854
mgf000945m Mimulus guttatus mgf000945m I 0.729
mgf004425m Mimulus guttatus mgf004425m I 0.729
GSMUA_Achr3G24170_001 Musa acuminata GSMUA_Achr3G24170_001 I 0.729
GSMUA_Achr2G01740_001 Musa acuminata GSMUA_Achr2G01740_001 I 0.702
OBART11G21780 Oryza barthii OBART11G21780 N 0.761
ORGLA11G0175900 Oryza glaberrima ORGLA11G0175900 N 0.761
OGLUM11G21110 Oryza glumaepatula OGLUM11G21110 N 0.783
BGIOSGA035654 Oryza indica BGIOSGA035654 N 0.739
OLONG_008007 Oryza longistaminata OLONG_008007 N 0.783
OMERI11G18020 Oryza meridionalis OMERI11G18020 N 0.739
ORUFI11G23650 Oryza rufipogon ORUFI11G23650 N 0.761
OS11G0658700 Oryza sativa OS11G0658700 N 0.761
Pavir.J04162 Panicum virgatum Pavir.J04162 I 0.809
Pavir.Hb00170 Panicum virgatum Pavir.Hb00170 I 0.809
PDK_20s1342861g001 Phoenix dactylifera PDK_20s1342861g001 I 0.848
PDK_20s1352301g001 Phoenix dactylifera PDK_20s1352301g001 I 0.851
POPTR_0008s08780 Populus trichocarpa POPTR_0008s08780 I 0.729
POPTR_0010s17450 Populus trichocarpa POPTR_0010s17450 N 0.739
AGL33 Populus trichocarpa POPTR_0018s08400 N 0.708
Pm024895 Prunus mume Pm024895 I 0.848
Pm006479 Prunus mume Pm006479 I 0.739
PRUPE_ppa015857mg Prunus persica PRUPE_ppa015857mg I 0.848
PRUPE_ppa017562mg Prunus persica PRUPE_ppa017562mg I 0.739
29813.m001508 Ricinus communis 29813.m001508 I 0.783
30138.m004061 Ricinus communis 30138.m004061 I 0.875
SapurV1A.0458s0040 Salix purpurea SapurV1A.0458s0040 I 0.783
SapurV1A.0149s0010 Salix purpurea SapurV1A.0149s0010 N 0.739
Si028357m.g Setaria italica Si028357m.g N 0.804
Solyc03g115910.1 Solanum lycopersicum Solyc03g115910.1 I 0.750
PGSC0003DMG400019525 Solanum tuberosum PGSC0003DMG400019525 N 0.702
Sb05g025970 Sorghum bicolor Sb05g025970 I 0.826
TCM_011687 Theobroma cacao TCM_011687 I 0.761
TCM_014051 Theobroma cacao TCM_014051 I 0.917
Traes_4AL_8DBE120BC Triticum aestivum Traes_4AL_8DBE120BC I 0.870
Traes_4BS_8B4AFA7C2 Triticum aestivum Traes_4BS_8B4AFA7C2 I 0.870
Traes_4DS_4C4EB1D21 Triticum aestivum Traes_4DS_4C4EB1D21 I 0.870
TRIUR3_33223 Triticum urartu TRIUR3_33223 I 0.870
AGL65 Vitis vinifera VIT_17s0000g06340 I 0.875
GRMZM2G441115 Zea mays GRMZM2G441115 I 0.783