ORUFI12G19230 (Oryza rufipogon)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ORUFI12G19230 T277085_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EFM
M07044_2.00 		Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN		 Dap-seq
OMalley et al.(2016)
At2g03500_col_a 		0.834 0.915
EFM
M07045_2.00 		Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY		 Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a 		0.834 0.915
NIGT1
M02328_2.00 		Oryza sativa
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH8646 		0.828 0.894
HHO3
M02289_2.00 		Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN		 PBM
Weirauch et al.(2014)
pTH7278 		0.820 0.894
HHO3
M07016_2.00 		Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN		 Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a 		0.820 0.894
HHO3
M07017_2.00 		Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND		 Dap-seq
OMalley et al.(2016)
At1g25550_col 		0.820 0.894
HHO2
M02290_2.00 		Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN		 PBM
Weirauch et al.(2014)
pTH7115 		0.801 0.872
HHO2
M07029_2.00 		Arabidopsis thaliana
AKATTCY
RGAATMT		 Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a 		0.801 0.872
HHO2
M07030_2.00 		Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY		 Dap-seq
OMalley et al.(2016)
At1g68670_col 		0.801 0.872
HHO6
M07024_2.00 		Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC		 Dap-seq
OMalley et al.(2016)
AT1G49560_col_a 		0.791 0.894
HHO6
M07025_2.00 		Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH		 Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a 		0.791 0.894
HRS1
M02284_2.00 		Arabidopsis thaliana
AGATTCYN
NRGAATCT		 PBM
Weirauch et al.(2014)
pTH7118 		0.791 0.872
HRS1
M01068_2.00 		Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN		 PBM
Sullivan et al.(2014)
pTH7648 		0.791 0.872
HRS1
M07004_2.00 		Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN		 Dap-seq
OMalley et al.(2016)
At1g13300_col_a 		0.791 0.872
HHO5
M07112_2.00 		Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND		 Dap-seq
OMalley et al.(2016)
AT4G37180_col_a 		0.787 0.872
HHO5
M07113_2.00 		Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN		 Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a 		0.787 0.872
PK19779.1
M02354_2.00 		Cannabis sativa
NNKATNCNNN
NNNGNATMNN		 PBM
Weirauch et al.(2014)
pTH9610 		0.779 0.872
PK14402.1
M02352_2.00 		Cannabis sativa
NDWGATTCSNN
NNSGAATCWHN		 PBM
Weirauch et al.(2014)
pTH9491 		0.738 0.851
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI12G19230.1 Myb 245 296

Links

Other Myb/SANT family TFs
Other Oryza rufipogon TFs

364 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I
S1FA3 Arabidopsis thaliana AT3G09735 D
S1FA1 Arabidopsis thaliana AT3G53370 I
S1FA2 Arabidopsis thaliana AT2G37120 I
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N
Bo00703s130 Brassica oleracea Bo00703s130 I
Bo00703s150 Brassica oleracea Bo00703s150 I
Bo1g144300 Brassica oleracea Bo1g144300 I
Bo3g061880 Brassica oleracea Bo3g061880 I
Bo5g138130 Brassica oleracea Bo5g138130 I
Bo6g067310 Brassica oleracea Bo6g067310 I
Bra034084 Brassica rapa Bra034084 I
Bra039779 Brassica rapa Bra039779 I
Bra029784 Brassica rapa Bra029784 I
Bra006994 Brassica rapa Bra006994 I
Bra003132 Brassica rapa Bra003132 I
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I
Carubv10025429m.g Capsella rubella Carubv10025429m.g I
Carubv10015035m.g Capsella rubella Carubv10015035m.g I
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I
Cla018556 Citrullus lanatus Cla018556 I
Cla018106 Citrullus lanatus Cla018106 I
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I
Cucsa.307040 Cucumis sativus Cucsa.307040 I
Cucsa.124240 Cucumis sativus Cucsa.124240 I
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I
GLYMA19G36350 Glycine max GLYMA19G36350 I
GLYMA10G05790 Glycine max GLYMA10G05790 I
GLYMA03G33640 Glycine max GLYMA03G33640 I
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I
MLOC_67411 Hordeum vulgare MLOC_67411 N
LPERR04G08400 Leersia perrieri LPERR04G08400 N
Lus10023177.g Linum usitatissimum Lus10023177.g I
Lus10015073.g Linum usitatissimum Lus10015073.g I
cassava45931.m1 Manihot esculenta cassava45931.m1 I
MTR_7g100880 Medicago truncatula MTR_7g100880 I
MTR_7g100890 Medicago truncatula MTR_7g100890 I
MTR_7g100905 Medicago truncatula MTR_7g100905 I
mgf000337m Mimulus guttatus mgf000337m I
mgf004062m Mimulus guttatus mgf004062m I
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I
OBART04G11660 Oryza barthii OBART04G11660 N
OBART04G11650 Oryza barthii OBART04G11650 N
OB04G18770 Oryza brachyantha OB04G18770 I
OB04G18780 Oryza brachyantha OB04G18780 I
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N
BGIOSGA015143 Oryza indica BGIOSGA015143 N
BGIOSGA015145 Oryza indica BGIOSGA015145 N
BGIOSGA015142 Oryza indica BGIOSGA015142 N
OMERI04G10280 Oryza meridionalis OMERI04G10280 N
ONIVA04G09620 Oryza nivara ONIVA04G09620 N
ONIVA04G09610 Oryza nivara ONIVA04G09610 N
OPUNC04G09660 Oryza punctata OPUNC04G09660 N
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N
S1FA2 Oryza sativa OS04G0408700 N
OS04G0408900 Oryza sativa OS04G0408900 N
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I
Pm002519 Prunus mume Pm002519 N
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N
29805.m001471 Ricinus communis 29805.m001471 I
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I
Si011030m.g Setaria italica Si011030m.g N
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I
Sb06g015340 Sorghum bicolor Sb06g015340 N
TCM_022113 Theobroma cacao TCM_022113 I
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I
GRMZM2G147424 Zea mays GRMZM2G147424 N