Pavir.J02718 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J02718 T289316_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.778 0.839
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.778 0.839
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.680 0.774
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.680 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J02718.1.p Myb 134 180
Pavir.J02718.1.p Myb 186 231

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

159 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22212 Aegilops tauschii F775_22212 I 0.855
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.715
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.706
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.706
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.689
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N 0.683
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.778
MYB118 Arabidopsis thaliana AT3G27785 D 0.680
MYB98 Arabidopsis thaliana AT4G18770 D 0.778
MYB64 Arabidopsis thaliana AT5G11050 N 0.683
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.663
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N 0.682
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.778
Bo1g019910 Brassica oleracea Bo1g019910 I 0.778
Bo2g028290 Brassica oleracea Bo2g028290 I 0.731
Bo3g018490 Brassica oleracea Bo3g018490 I 0.727
Bo3g157300 Brassica oleracea Bo3g157300 I 0.781
Bo7g106240 Brassica oleracea Bo7g106240 I 0.753
Bra006744 Brassica rapa Bra006744 I 0.727
Bra012579 Brassica rapa Bra012579 I 0.740
Bra013346 Brassica rapa Bra013346 I 0.778
Bra020346 Brassica rapa Bra020346 I 0.736
Bra020992 Brassica rapa Bra020992 I 0.772
Bra025299 Brassica rapa Bra025299 I 0.694
Cagra.0891s0081 Capsella grandiflora Cagra.0891s0081 I 0.715
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.663
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N 0.704
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.778
Carubv10003695m.g Capsella rubella Carubv10003695m.g N 0.704
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.778
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.663
Carubv10028458m.g Capsella rubella Carubv10028458m.g I 0.715
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.700
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.763
Ca_07482 Cicer arietinum Ca_07482 I 0.752
Ca_17087 Cicer arietinum Ca_17087 I 0.757
Ca_17294 Cicer arietinum Ca_17294 I 0.759
Ca_19427 Cicer arietinum Ca_19427 I 0.697
Cla010586 Citrullus lanatus Cla010586 I 0.668
Cla019490 Citrullus lanatus Cla019490 I 0.797
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.689
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.785
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.690
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.689
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.690
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.785
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.790
Eucgr.B00300 Eucalyptus grandis Eucgr.B00300 I 0.705
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.814
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.672
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.703
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.708
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.781
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.703
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.719
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.785
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.752
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.707
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.791
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.667
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.666
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.682
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.683
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.716
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.794
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.683
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.837
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.795
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.747
Lus10013084.g Linum usitatissimum Lus10013084.g N 0.663
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.684
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.767
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.717
Lus10040684.g Linum usitatissimum Lus10040684.g N 0.681
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.768
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.666
MDP0000215359 Malus domestica MDP0000215359 I 0.770
MDP0000319656 Malus domestica MDP0000319656 I 0.719
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.770
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.700
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.680
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.850
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.718
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.790
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.678
MTR_4g088015 Medicago truncatula MTR_4g088015 I 0.684
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.698
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.782
MTR_7g037260 Medicago truncatula MTR_7g037260 I 0.678
mg025334m Mimulus guttatus mg025334m I 0.673
mgf023372m Mimulus guttatus mgf023372m I 0.671
mgf024290m Mimulus guttatus mgf024290m I 0.687
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.675
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.746
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.736
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.675
OBART06G04170 Oryza barthii OBART06G04170 I 0.828
OBART12G04480 Oryza barthii OBART12G04480 I 0.804
OBART12G04500 Oryza barthii OBART12G04500 I 0.804
OB06G13860 Oryza brachyantha OB06G13860 I 0.837
OB12G14410 Oryza brachyantha OB12G14410 I 0.784
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.828
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.804
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.828
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.804
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.828
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.804
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.804
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.828
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.828
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.804
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.828
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.804
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.828
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.795
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.828
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.795
OS06G0162700 Oryza sativa OS06G0162700 I 0.828
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.909
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.844
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.872
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.666
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.676
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.711
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.748
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.676
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.682
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.754
Pm000541 Prunus mume Pm000541 I 0.719
Pm015681 Prunus mume Pm015681 I 0.671
Pm024743 Prunus mume Pm024743 I 0.770
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.719
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.680
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.770
29681.m001315 Ricinus communis 29681.m001315 N 0.680
29917.m001977 Ricinus communis 29917.m001977 I 0.717
30147.m013937 Ricinus communis 30147.m013937 I 0.794
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.753
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.702
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.769
Si039046m.g Setaria italica Si039046m.g I 0.850
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.691
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.720
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.665
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.691
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.720
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.665
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.883
TCM_012087 Theobroma cacao TCM_012087 I 0.794
TCM_041651 Theobroma cacao TCM_041651 N 0.705
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.860
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.859
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.855
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.855
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.826
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.855
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.765
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.820
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.877