MDP0000803116 (Malus domestica)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 MDP0000803116 T323588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.982 0.920
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.939 0.800
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.938 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000803116 SBP 213 287

Links

Other SBP family TFs
Other Malus domestica TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.936
AMTR_s00106p00144050 Amborella trichopoda AMTR_s00106p00144050 I 0.904
Aquca_024_00116 Aquilegia coerulea Aquca_024_00116 I 0.955
SPL8 Arabidopsis lyrata fgenesh2_kg.1__23__AT1G02065.1 I 0.982
SPL8 Arabidopsis thaliana AT1G02065 D 0.982
Bostr.5325s0127 Boechera stricta Bostr.5325s0127 I 0.982
BRADI1G31390 Brachypodium distachyon BRADI1G31390 I 0.901
BRADI3G05720 Brachypodium distachyon BRADI3G05720 I 0.900
BRADI5G24670 Brachypodium distachyon BRADI5G24670 I 0.924
Bo5g001290 Brassica oleracea Bo5g001290 I 0.982
Bo8g118210 Brassica oleracea Bo8g118210 I 0.982
Bra032662 Brassica rapa Bra032662 I 0.982
Bra033221 Brassica rapa Bra033221 I 0.982
PK25779.1 Cannabis sativa PK25779.1 I 0.985
Cagra.1968s0141 Capsella grandiflora Cagra.1968s0141 I 0.982
Carubv10009506m.g Capsella rubella Carubv10009506m.g I 0.983
evm.TU.supercontig_149.10 Carica papaya evm.TU.supercontig_149.10 I 0.985
Ca_18942 Cicer arietinum Ca_18942 I 0.985
Cla006776 Citrullus lanatus Cla006776 I 0.985
Cla020006 Citrullus lanatus Cla020006 I 0.896
Ciclev10021106m.g Citrus clementina Ciclev10021106m.g I 0.986
orange1.1g020302m.g Citrus sinensis orange1.1g020302m.g I 0.986
Cucsa.120620 Cucumis sativus Cucsa.120620 I 0.976
Cucsa.126820 Cucumis sativus Cucsa.126820 I 0.890
Eucgr.E01600 Eucalyptus grandis Eucgr.E01600 I 0.985
Thhalv10008083m.g Eutrema salsugineum Thhalv10008083m.g I 0.982
gene04786-v1.0-hybrid Fragaria vesca gene04786-v1.0-hybrid I 0.985
GLYMA01G15258 Glycine max GLYMA01G15258 I 0.978
GLYMA03G27180 Glycine max GLYMA03G27180 I 0.985
GLYMA07G14610 Glycine max GLYMA07G14610 I 0.985
Gorai.001G176000 Gossypium raimondii Gorai.001G176000 I 0.985
Gorai.008G107400 Gossypium raimondii Gorai.008G107400 I 0.985
MLOC_326 Hordeum vulgare MLOC_326 I 0.908
MLOC_51510 Hordeum vulgare MLOC_51510 I 0.893
MLOC_57503 Hordeum vulgare MLOC_57503 I 0.924
LPERR02G05080 Leersia perrieri LPERR02G05080 I 0.912
LPERR04G23580 Leersia perrieri LPERR04G23580 I 0.924
LPERR06G19480 Leersia perrieri LPERR06G19480 I 0.908
Lus10028181.g Linum usitatissimum Lus10028181.g I 0.984
Lus10042882.g Linum usitatissimum Lus10042882.g I 0.984
cassava13944.valid.m1 Manihot esculenta cassava13944.valid.m1 I 0.974
cassava19899.m1 Manihot esculenta cassava19899.m1 I 0.985
MTR_8g005960 Medicago truncatula MTR_8g005960 I 0.985
mgf016085m Mimulus guttatus mgf016085m I 0.984
GSMUA_Achr10G06210_001 Musa acuminata GSMUA_Achr10G06210_001 I 0.949
GSMUA_Achr2G11940_001 Musa acuminata GSMUA_Achr2G11940_001 I 0.954
GSMUA_Achr3G00810_001 Musa acuminata GSMUA_Achr3G00810_001 I 0.940
GSMUA_Achr4G20590_001 Musa acuminata GSMUA_Achr4G20590_001 I 0.946
GSMUA_Achr4G24610_001 Musa acuminata GSMUA_Achr4G24610_001 I 0.945
GSMUA_Achr4G28960_001 Musa acuminata GSMUA_Achr4G28960_001 I 0.959
GSMUA_Achr7G05010_001 Musa acuminata GSMUA_Achr7G05010_001 I 0.919
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I 0.960
OBART04G27990 Oryza barthii OBART04G27990 I 0.924
OB02G15090 Oryza brachyantha OB02G15090 I 0.912
OB04G34990 Oryza brachyantha OB04G34990 I 0.924
OB06G31100 Oryza brachyantha OB06G31100 I 0.908
ORGLA02G0053800 Oryza glaberrima ORGLA02G0053800 I 0.931
ORGLA04G0242500 Oryza glaberrima ORGLA04G0242500 I 0.924
ORGLA06G0196600 Oryza glaberrima ORGLA06G0196600 I 0.908
OGLUM04G27880 Oryza glumaepatula OGLUM04G27880 I 0.924
OGLUM06G24700 Oryza glumaepatula OGLUM06G24700 I 0.908
BGIOSGA007655 Oryza indica BGIOSGA007655 I 0.931
BGIOSGA017275 Oryza indica BGIOSGA017275 I 0.924
SPL10 Oryza indica BGIOSGA023408 I 0.908
OLONG_021174 Oryza longistaminata OLONG_021174 I 0.924
OMERI02G06720 Oryza meridionalis OMERI02G06720 I 0.931
OMERI04G23390 Oryza meridionalis OMERI04G23390 I 0.924
OMERI06G23430 Oryza meridionalis OMERI06G23430 I 0.908
ONIVA01G24470 Oryza nivara ONIVA01G24470 I 0.908
ONIVA04G26660 Oryza nivara ONIVA04G26660 I 0.924
OPUNC02G05050 Oryza punctata OPUNC02G05050 I 0.909
OPUNC04G25460 Oryza punctata OPUNC04G25460 I 0.924
OPUNC06G21190 Oryza punctata OPUNC06G21190 I 0.908
ORUFI04G29620 Oryza rufipogon ORUFI04G29620 I 0.924
ORUFI06G25170 Oryza rufipogon ORUFI06G25170 I 0.908
SPL5 Oryza sativa OS02G0177300 I 0.931
SPL8 Oryza sativa OS04G0656500 I 0.924
SPL10 Oryza sativa OS06G0659100 I 0.908
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.912
Pavir.Da00293 Panicum virgatum Pavir.Da00293 I 0.908
Pavir.Db00525 Panicum virgatum Pavir.Db00525 I 0.908
Pavir.Ga00066 Panicum virgatum Pavir.Ga00066 I 0.924
Pavir.Gb00284 Panicum virgatum Pavir.Gb00284 I 0.924
fgenesh1_pg.scaffold_118000004 Physcomitrella patens fgenesh1_pg.scaffold_118000004 I 0.917
fgenesh1_pg.scaffold_194000034 Physcomitrella patens fgenesh1_pg.scaffold_194000034 D 0.938
fgenesh1_pg.scaffold_23000047 Physcomitrella patens fgenesh1_pg.scaffold_23000047 I 0.957
fgenesh1_pg.scaffold_252000020 Physcomitrella patens fgenesh1_pg.scaffold_252000020 D 0.939
fgenesh1_pg.scaffold_337000032 Physcomitrella patens fgenesh1_pg.scaffold_337000032 I 0.959
fgenesh1_pg.scaffold_50000085 Physcomitrella patens fgenesh1_pg.scaffold_50000085 I 0.937
POPTR_0002s14320 Populus trichocarpa POPTR_0002s14320 I 0.985
POPTR_0014s05680 Populus trichocarpa POPTR_0014s05680 I 0.985
Pm017777 Prunus mume Pm017777 I 0.978
PRUPE_ppa008560mg Prunus persica PRUPE_ppa008560mg I 0.978
30174.m008803 Ricinus communis 30174.m008803 I 0.985
SapurV1A.0033s0300 Salix purpurea SapurV1A.0033s0300 I 0.982
SapurV1A.0382s0100 Salix purpurea SapurV1A.0382s0100 I 0.985
SELMODRAFT_17706 Selaginella moellendorffii SELMODRAFT_17706 I 0.943
SELMODRAFT_17777 Selaginella moellendorffii SELMODRAFT_17777 I 0.928
SELMODRAFT_28629 Selaginella moellendorffii SELMODRAFT_28629 I 0.928
SELMODRAFT_28630 Selaginella moellendorffii SELMODRAFT_28630 I 0.943
SELMODRAFT_49502 Selaginella moellendorffii SELMODRAFT_49502 I 0.949
SELMODRAFT_59543 Selaginella moellendorffii SELMODRAFT_59543 I 0.949
SELMODRAFT_59884 Selaginella moellendorffii SELMODRAFT_59884 I 0.928
SELMODRAFT_7674 Selaginella moellendorffii SELMODRAFT_7674 I 0.928
Si006559m.g Setaria italica Si006559m.g I 0.908
Si017338m.g Setaria italica Si017338m.g I 0.924
Si022315m.g Setaria italica Si022315m.g I 0.924
Solyc01g090730.2 Solanum lycopersicum Solyc01g090730.2 I 0.985
Solyc10g018780.1 Solanum lycopersicum Solyc10g018780.1 I 0.985
PGSC0003DMG400026027 Solanum tuberosum PGSC0003DMG400026027 I 0.985
PGSC0003DMG400029162 Solanum tuberosum PGSC0003DMG400029162 I 0.985
Sb04g005180 Sorghum bicolor Sb04g005180 I 0.900
Sb06g031290 Sorghum bicolor Sb06g031290 I 0.924
Sb10g026200 Sorghum bicolor Sb10g026200 I 0.908
TCM_005622 Theobroma cacao TCM_005622 I 0.985
Traes_7DL_ED348696E Triticum aestivum Traes_7DL_ED348696E I 0.908
TRIUR3_34351 Triticum urartu TRIUR3_34351 I 0.924
SPL8 Vitis vinifera VIT_15s0021g02300 I 0.982
GRMZM2G036297 Zea mays GRMZM2G036297 I 0.924
GRMZM2G058588 Zea mays GRMZM2G058588 I 0.921
GRMZM2G101499 Zea mays GRMZM2G101499 I 0.904
GRMZM2G111136 Zea mays GRMZM2G111136 I 0.900
GRMZM2G168229 Zea mays GRMZM2G168229 I 0.924