orange1.1g020302m.g (Citrus sinensis)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03110 (SBP) IPR004333 orange1.1g020302m.g T323602_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL8
M02714_2.00 		Arabidopsis thaliana
DWWDDDGTACRNWNHW
WDNWNYGTACHHHWWH		 SELEX
Mathelier et al.(2014)
MA0578.1 		0.983 0.933
fgenesh1_pg.scaffold_252000020
M02481_2.00 		Physcomitrella patens
NNNKRCVNN
NNBGYMNNN		 PBM
Weirauch et al.(2014)
pTH8491 		0.941 0.800
fgenesh1_pg.scaffold_194000034
M02480_2.00 		Physcomitrella patens
NNNGTACNNN
NNNGTACNNN		 PBM
Weirauch et al.(2014)
pTH8580 		0.939 0.813
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g020302m SBP 182 256
orange1.1g023467m SBP 182 256
orange1.1g026888m SBP 182 230

Links

Other SBP family TFs
Other Citrus sinensis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31908 Aegilops tauschii F775_31908 N 0.000
Aquca_018_00218 Aquilegia coerulea Aquca_018_00218 I 0.000
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.000
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.000
SPL10 Arabidopsis thaliana AT1G27370 D 0.000
SPL2 Arabidopsis thaliana AT5G43270 N 0.000
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.000
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.000
Bostr.3148s0148 Boechera stricta Bostr.3148s0148 N 0.000
BRADI3G03510 Brachypodium distachyon BRADI3G03510 N 0.000
BRADI3G05510 Brachypodium distachyon BRADI3G05510 I 0.000
Bo5g051970 Brassica oleracea Bo5g051970 I 0.000
Bo5g051980 Brassica oleracea Bo5g051980 I 0.000
Bo7g049940 Brassica oleracea Bo7g049940 I 0.000
Bo7g049950 Brassica oleracea Bo7g049950 I 0.000
Bo7g065290 Brassica oleracea Bo7g065290 N 0.000
Bo9g058970 Brassica oleracea Bo9g058970 N 0.000
Bra010949 Brassica rapa Bra010949 I 0.000
Bra027478 Brassica rapa Bra027478 N 0.000
Bra030040 Brassica rapa Bra030040 I 0.000
Bra030041 Brassica rapa Bra030041 I 0.000
Bra032823 Brassica rapa Bra032823 I 0.000
Bra033671 Brassica rapa Bra033671 N 0.000
PK16953.1 Cannabis sativa PK16953.1 N 0.000
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.000
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.000
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.000
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.000
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.000
Ca_08506 Cicer arietinum Ca_08506 I 0.000
Ca_11356 Cicer arietinum Ca_11356 I 0.000
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.000
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.000
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.000
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.000
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.000
GLYMA11G36980 Glycine max GLYMA11G36980 N 0.000
GLYMA18G00903 Glycine max GLYMA18G00903 N 0.000
Gorai.002G182700 Gossypium raimondii Gorai.002G182700 N 0.000
Gorai.005G166500 Gossypium raimondii Gorai.005G166500 N 0.000
MLOC_11199 Hordeum vulgare MLOC_11199 N 0.000
MLOC_62426 Hordeum vulgare MLOC_62426 N 0.000
LPERR02G02980 Leersia perrieri LPERR02G02980 N 0.000
LPERR02G04880 Leersia perrieri LPERR02G04880 N 0.000
LPERR06G22200 Leersia perrieri LPERR06G22200 N 0.000
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.000
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.000
Lus10021614.g Linum usitatissimum Lus10021614.g N 0.000
LjSGA_017270.1 Lotus japonicus LjSGA_017270.1 N 0.000
LjSGA_032871.1 Lotus japonicus LjSGA_032871.1 N 0.000
MDP0000155354 Malus domestica MDP0000155354 N 0.000
cassava12059.valid.m1 Manihot esculenta cassava12059.valid.m1 N 0.000
cassava6540.valid.m1 Manihot esculenta cassava6540.valid.m1 N 0.000
MTR_3g085180 Medicago truncatula MTR_3g085180 N 0.000
mgf010397m Mimulus guttatus mgf010397m N 0.000
mgf019346m Mimulus guttatus mgf019346m I 0.000
GSMUA_Achr10G02970_001 Musa acuminata GSMUA_Achr10G02970_001 N 0.000
GSMUA_Achr3G05360_001 Musa acuminata GSMUA_Achr3G05360_001 N 0.000
GSMUA_Achr3G27750_001 Musa acuminata GSMUA_Achr3G27750_001 N 0.000
GSMUA_Achr4G05720_001 Musa acuminata GSMUA_Achr4G05720_001 N 0.000
GSMUA_Achr4G12470_001 Musa acuminata GSMUA_Achr4G12470_001 I 0.000
GSMUA_Achr5G21990_001 Musa acuminata GSMUA_Achr5G21990_001 N 0.000
GSMUA_Achr5G22630_001 Musa acuminata GSMUA_Achr5G22630_001 N 0.000
GSMUA_Achr6G36010_001 Musa acuminata GSMUA_Achr6G36010_001 N 0.000
GSMUA_Achr8G23820_001 Musa acuminata GSMUA_Achr8G23820_001 N 0.000
GSMUA_Achr9G14160_001 Musa acuminata GSMUA_Achr9G14160_001 N 0.000
GSMUA_Achr9G23140_001 Musa acuminata GSMUA_Achr9G23140_001 I 0.000
OBART02G03260 Oryza barthii OBART02G03260 N 0.000
OBART06G23820 Oryza barthii OBART06G23820 N 0.000
OBART06G26610 Oryza barthii OBART06G26610 N 0.000
OB02G12930 Oryza brachyantha OB02G12930 N 0.000
OB02G14840 Oryza brachyantha OB02G14840 N 0.000
OB06G31550 Oryza brachyantha OB06G31550 N 0.000
OB06G34330 Oryza brachyantha OB06G34330 N 0.000
ORGLA02G0030600 Oryza glaberrima ORGLA02G0030600 N 0.000
ORGLA02G0051400 Oryza glaberrima ORGLA02G0051400 N 0.000
ORGLA06G0199900 Oryza glaberrima ORGLA06G0199900 N 0.000
ORGLA06G0222300 Oryza glaberrima ORGLA06G0222300 N 0.000
OGLUM02G05530 Oryza glumaepatula OGLUM02G05530 N 0.000
OGLUM06G25070 Oryza glumaepatula OGLUM06G25070 N 0.000
OGLUM06G28030 Oryza glumaepatula OGLUM06G28030 N 0.000
SPL3 Oryza indica BGIOSGA007499 N 0.000
BGIOSGA007643 Oryza indica BGIOSGA007643 N 0.000
SPL12 Oryza indica BGIOSGA020577 N 0.000
BGIOSGA020731 Oryza indica BGIOSGA020731 N 0.000
OLONG_012160 Oryza longistaminata OLONG_012160 N 0.000
OLONG_025693 Oryza longistaminata OLONG_025693 N 0.000
OMERI02G03900 Oryza meridionalis OMERI02G03900 N 0.000
OMERI02G06420 Oryza meridionalis OMERI02G06420 N 0.000
OMERI06G23750 Oryza meridionalis OMERI06G23750 N 0.000
OMERI06G26720 Oryza meridionalis OMERI06G26720 N 0.000
ONIVA02G03070 Oryza nivara ONIVA02G03070 N 0.000
ONIVA02G05960 Oryza nivara ONIVA02G05960 N 0.000
ONIVA06G27990 Oryza nivara ONIVA06G27990 N 0.000
ONIVA06G29160 Oryza nivara ONIVA06G29160 N 0.000
OPUNC02G02570 Oryza punctata OPUNC02G02570 N 0.000
OPUNC02G04800 Oryza punctata OPUNC02G04800 N 0.000
OPUNC06G24320 Oryza punctata OPUNC06G24320 N 0.000
ORUFI02G03180 Oryza rufipogon ORUFI02G03180 N 0.000
ORUFI02G05750 Oryza rufipogon ORUFI02G05750 N 0.000
ORUFI06G25590 Oryza rufipogon ORUFI06G25590 N 0.000
ORUFI06G28570 Oryza rufipogon ORUFI06G28570 N 0.000
OS02G0139400 Oryza sativa OS02G0139400 N 0.000
SPL4 Oryza sativa OS02G0174100 N 0.000
SPL11 Oryza sativa OS06G0663500 N 0.000
SPL12 Oryza sativa OS06G0703500 N 0.000
Pavir.Aa03225 Panicum virgatum Pavir.Aa03225 N 0.000
Pavir.Ab00358 Panicum virgatum Pavir.Ab00358 N 0.000
Pavir.Ab00499 Panicum virgatum Pavir.Ab00499 N 0.000
Pavir.J20730 Panicum virgatum Pavir.J20730 N 0.000
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.000
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.000
POPTR_0018s14680 Populus trichocarpa POPTR_0018s14680 N 0.000
Pm007020 Prunus mume Pm007020 N 0.000
PRUPE_ppa005013mg Prunus persica PRUPE_ppa005013mg N 0.000
29929.m004641 Ricinus communis 29929.m004641 I 0.000
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.000
SapurV1A.0430s0160 Salix purpurea SapurV1A.0430s0160 N 0.000
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.000
Si017520m.g Setaria italica Si017520m.g N 0.000
Si017749m.g Setaria italica Si017749m.g N 0.000
Solyc04g045560.2 Solanum lycopersicum Solyc04g045560.2 N 0.000
Solyc05g015510.2 Solanum lycopersicum Solyc05g015510.2 N 0.000
PGSC0003DMG400026736 Solanum tuberosum PGSC0003DMG400026736 I 0.000
PGSC0003DMG400034310 Solanum tuberosum PGSC0003DMG400034310 N 0.000
Sb04g003175 Sorghum bicolor Sb04g003175 N 0.000
Sb04g004940 Sorghum bicolor Sb04g004940 N 0.000
TCM_008772 Theobroma cacao TCM_008772 N 0.000
Traes_6AS_32A35158A Triticum aestivum Traes_6AS_32A35158A N 0.000
Traes_6AS_99C6A3B0B Triticum aestivum Traes_6AS_99C6A3B0B N 0.000
Traes_6BS_F50663DF7 Triticum aestivum Traes_6BS_F50663DF7 N 0.000
Traes_6DS_7B1596298 Triticum aestivum Traes_6DS_7B1596298 N 0.000
Traes_6DS_C4D93239C Triticum aestivum Traes_6DS_C4D93239C N 0.000
TRIUR3_09477 Triticum urartu TRIUR3_09477 N 0.000
SPL2 Vitis vinifera VIT_11s0065g00170 N 0.000
GRMZM2G065451 Zea mays GRMZM2G065451 N 0.000
GRMZM2G097275 Zea mays GRMZM2G097275 N 0.000
GRMZM2G126827 Zea mays GRMZM2G126827 N 0.000
GRMZM2G156621 Zea mays GRMZM2G156621 N 0.000
GRMZM2G163813 Zea mays GRMZM2G163813 N 0.000