Pavir.Da02402 (Panicum virgatum)
Whirly

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08536 (Whirly) IPR013742 Pavir.Da02402 T350645_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Da02402.1.p Whirly 96 231
Pavir.Da02402.2.p Whirly 96 231

Links

Other Whirly family TFs
Other Panicum virgatum TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00133p00020030 Amborella trichopoda AMTR_s00133p00020030 N 0.735
Aquca_002_00510 Aquilegia coerulea Aquca_002_00510 N 0.779
ATWHY3 Arabidopsis lyrata fgenesh2_kg.5__172__AT2G02740.1 N 0.772
ATWHY1 Arabidopsis lyrata fgenesh2_kg.1__1569__AT1G14410.1 N 0.750
WHY1 Arabidopsis thaliana AT1G14410 N 0.757
WHY3 Arabidopsis thaliana AT2G02740 N 0.772
Bostr.0556s0088 Boechera stricta Bostr.0556s0088 N 0.772
BRADI1G51040 Brachypodium distachyon BRADI1G51040 N 0.956
Bo8g066030 Brassica oleracea Bo8g066030 N 0.743
Bo7g080560 Brassica oleracea Bo7g080560 N 0.757
Bra024809 Brassica rapa Bra024809 N 0.765
Bra016702 Brassica rapa Bra016702 N 0.757
PK22670.1 Cannabis sativa PK22670.1 N 0.728
Cagra.0534s0030 Capsella grandiflora Cagra.0534s0030 N 0.772
Cagra.3501s0060 Capsella grandiflora Cagra.3501s0060 N 0.750
Carubv10010024m.g Capsella rubella Carubv10010024m.g N 0.743
Carubv10017841m.g Capsella rubella Carubv10017841m.g N 0.772
evm.TU.supercontig_1007.4 Carica papaya evm.TU.supercontig_1007.4 N 0.765
Ca_24297 Cicer arietinum Ca_24297 N 0.706
Cla022217 Citrullus lanatus Cla022217 N 0.743
Ciclev10032427m.g Citrus clementina Ciclev10032427m.g N 0.735
orange1.1g024467m.g Citrus sinensis orange1.1g024467m.g N 0.735
Cucsa.005520 Cucumis sativus Cucsa.005520 N 0.713
Eucgr.G02539 Eucalyptus grandis Eucgr.G02539 N 0.743
Thhalv10004763m.g Eutrema salsugineum Thhalv10004763m.g N 0.765
GLYMA08G40850 Glycine max GLYMA08G40850 N 0.757
GLYMA18G16200 Glycine max GLYMA18G16200 N 0.765
Gorai.013G077400 Gossypium raimondii Gorai.013G077400 N 0.757
MLOC_11586 Hordeum vulgare MLOC_11586 N 0.926
LPERR06G02670 Leersia perrieri LPERR06G02670 N 0.934
Lus10036723.g Linum usitatissimum Lus10036723.g N 0.713
LjSGA_053590.1 Lotus japonicus LjSGA_053590.1 N 0.707
MDP0000268451 Malus domestica MDP0000268451 N 0.728
cassava35817.valid.m1 Manihot esculenta cassava35817.valid.m1 N 0.757
mgf002465m Mimulus guttatus mgf002465m N 0.765
GSMUA_Achr10G21100_001 Musa acuminata GSMUA_Achr10G21100_001 N 0.787
OBART06G03050 Oryza barthii OBART06G03050 N 0.926
ORGLA06G0029900 Oryza glaberrima ORGLA06G0029900 N 0.926
BGIOSGA022297 Oryza indica BGIOSGA022297 N 0.934
OMERI06G03280 Oryza meridionalis OMERI06G03280 N 0.934
OMERI07G11550 Oryza meridionalis OMERI07G11550 N 0.941
ONIVA06G03980 Oryza nivara ONIVA06G03980 N 0.934
OPUNC06G02750 Oryza punctata OPUNC06G02750 N 0.934
ORUFI06G03010 Oryza rufipogon ORUFI06G03010 N 0.934
OS06G0145800 Oryza sativa OS06G0145800 N 0.934
Pavir.Db02235 Panicum virgatum Pavir.Db02235 N 0.985
PDK_20s1701491g001 Phoenix dactylifera PDK_20s1701491g001 N 0.710
POPTR_0010s10260 Populus trichocarpa POPTR_0010s10260 N 0.750
POPTR_0008s14840 Populus trichocarpa POPTR_0008s14840 N 0.728
Pm006558 Prunus mume Pm006558 N 0.713
PRUPE_ppa009776mg Prunus persica PRUPE_ppa009776mg N 0.713
29736.m002027 Ricinus communis 29736.m002027 N 0.743
SapurV1A.0609s0180 Salix purpurea SapurV1A.0609s0180 N 0.772
Si006951m.g Setaria italica Si006951m.g N 1.000
Solyc05g007100.2 Solanum lycopersicum Solyc05g007100.2 N 0.735
PGSC0003DMG400017627 Solanum tuberosum PGSC0003DMG400017627 N 0.728
Sb10g003170 Sorghum bicolor Sb10g003170 N 0.993
TCM_011795 Theobroma cacao TCM_011795 N 0.750
Traes_7DS_B1FD1C84F Triticum aestivum Traes_7DS_B1FD1C84F N 0.908
Traes_4AL_FE94301FD Triticum aestivum Traes_4AL_FE94301FD N 0.934
VIT_01s0026g01720 Vitis vinifera VIT_01s0026g01720 N 0.765
GRMZM2G155662 Zea mays GRMZM2G155662 N 0.978