Cagra.0736s0034 (Capsella grandiflora)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Cagra.0736s0034 T351558_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtGRF6
M02545_2.00 		Arabidopsis thaliana
NNNNYDNN
NNHRNNNN		 PBM
Weirauch et al.(2014)
pTH7356 		0.767 0.767
AtGRF6
M07369_2.00 		Arabidopsis thaliana
NNNNNHNTGTCAGA
TCTGACANDNNNNN		 Dap-seq
OMalley et al.(2016)
AtGRF6_col_a 		0.767 0.767
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0736s0034.1.p WRC 82 124

Links

Other WRC family TFs
Other Capsella grandiflora TFs

461 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.000
SCL3 Arabidopsis thaliana AT1G50420 N 0.000
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.000
Bo3g179450 Brassica oleracea Bo3g179450 N 0.000
Bra014251 Brassica rapa Bra014251 N 0.000
Bra018848 Brassica rapa Bra018848 N 0.000
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.000
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.000
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.000
Ca_11133 Cicer arietinum Ca_11133 N 0.000
Ca_27441 Cicer arietinum Ca_27441 N 0.000
Cla006433 Citrullus lanatus Cla006433 N 0.000
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.000
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.000
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.000
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.000
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.000
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.000
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.000
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.000
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.000
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.000
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.000
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.000
Pm012190 Prunus mume Pm012190 N 0.000
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.000
30024.m001746 Ricinus communis 30024.m001746 N 0.000
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.000
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.000
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.000
TCM_040833 Theobroma cacao TCM_040833 N 0.000
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.000