cassava13860.valid.m1 (Manihot esculenta)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 cassava13860.valid.m1 T202045_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava13860.valid.m1 GRAS 26 447

Links

Other GRAS family TFs
Other Manihot esculenta TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30024.m001746 Ricinus communis 30024.m001746 N 0.890
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.886
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.849
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.844
TCM_040833 Theobroma cacao TCM_040833 N 0.838
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.836
Pm012190 Prunus mume Pm012190 N 0.822
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.817
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.814
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.805
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.802
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.802
Ca_27441 Cicer arietinum Ca_27441 N 0.792
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.786
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.784
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.778
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.775
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.775
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.773
Ca_11133 Cicer arietinum Ca_11133 N 0.768
Lus10009717.g Linum usitatissimum Lus10009717.g N 0.764
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.763
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.763
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.762
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.759
Cla006433 Citrullus lanatus Cla006433 N 0.759
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.756
Lus10022418.g Linum usitatissimum Lus10022418.g N 0.755
30131.m007244 Ricinus communis 30131.m007244 N 0.751
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.751
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.748
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.748
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.745
chr1.CM0794.360.nd Lotus japonicus chr1.CM0794.360.nd N 0.745
SCL3 Arabidopsis thaliana AT1G50420 N 0.742
POPTR_0001s06090 Populus trichocarpa POPTR_0001s06090 N 0.742
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.742
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.742
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.742
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.741
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.740
TCM_042392 Theobroma cacao TCM_042392 N 0.740
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.740
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.738
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.737
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.737
Pm016466 Prunus mume Pm016466 N 0.737
Pm029840 Prunus mume Pm029840 N 0.737
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.737
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.737
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.736
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.734
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.734
Bo3g179450 Brassica oleracea Bo3g179450 N 0.729
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.728
Bo5g078760 Brassica oleracea Bo5g078760 N 0.726
Bra018848 Brassica rapa Bra018848 N 0.726
Bra014251 Brassica rapa Bra014251 N 0.724
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.723
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.723
GLYMA01G43620 Glycine max GLYMA01G43620 N 0.721
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.719
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.718
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.714
gene14438-v1.0-hybrid Fragaria vesca gene14438-v1.0-hybrid N 0.711
Bo6g022200 Brassica oleracea Bo6g022200 N 0.707
GLYMA11G01850 Glycine max GLYMA11G01850 N 0.707
mgf022906m Mimulus guttatus mgf022906m N 0.704
PK02707.1 Cannabis sativa PK02707.1 N 0.704
mgf008315m Mimulus guttatus mgf008315m N 0.703
Cla020893 Citrullus lanatus Cla020893 N 0.701