POPTR_0001s06090 (Populus trichocarpa)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03514 (GRAS) IPR005202 POPTR_0001s06090 T201161_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s06090.1 GRAS 49 471

Links

Other GRAS family TFs
Other Populus trichocarpa TFs

64 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.1723s0080 Salix purpurea SapurV1A.1723s0080 N 0.976
SapurV1A.0504s0280 Salix purpurea SapurV1A.0504s0280 N 0.961
POPTR_0003s20100 Populus trichocarpa POPTR_0003s20100 N 0.917
SapurV1A.0009s0760 Salix purpurea SapurV1A.0009s0760 N 0.907
cassava1375.valid.m1 Manihot esculenta cassava1375.valid.m1 N 0.901
cassava1376.valid.m1 Manihot esculenta cassava1376.valid.m1 N 0.901
30131.m007244 Ricinus communis 30131.m007244 N 0.890
orange1.1g011736m.g Citrus sinensis orange1.1g011736m.g N 0.887
Ciclev10031389m.g Citrus clementina Ciclev10031389m.g N 0.882
cassava20989.m1 Manihot esculenta cassava20989.m1 N 0.880
evm.TU.supercontig_197.7 Carica papaya evm.TU.supercontig_197.7 N 0.839
TCM_042392 Theobroma cacao TCM_042392 N 0.837
VIT_13s0019g01220 Vitis vinifera VIT_13s0019g01220 N 0.837
Gorai.012G080500 Gossypium raimondii Gorai.012G080500 N 0.829
Cla020893 Citrullus lanatus Cla020893 N 0.810
Cucsa.308180 Cucumis sativus Cucsa.308180 N 0.804
Gorai.013G015100 Gossypium raimondii Gorai.013G015100 N 0.804
Eucgr.G03258 Eucalyptus grandis Eucgr.G03258 N 0.802
SCL3 Vitis vinifera VIT_06s0009g02390 N 0.796
TCM_040833 Theobroma cacao TCM_040833 N 0.792
Gorai.006G125700 Gossypium raimondii Gorai.006G125700 N 0.784
PRUPE_ppa005439mg Prunus persica PRUPE_ppa005439mg N 0.782
Pm016466 Prunus mume Pm016466 N 0.782
Pm029840 Prunus mume Pm029840 N 0.782
gene14438-v1.0-hybrid Fragaria vesca gene14438-v1.0-hybrid N 0.782
PK02707.1 Cannabis sativa PK02707.1 N 0.780
Aquca_014_00674 Aquilegia coerulea Aquca_014_00674 N 0.769
Ciclev10015219m.g Citrus clementina Ciclev10015219m.g N 0.766
orange1.1g014413m.g Citrus sinensis orange1.1g014413m.g N 0.766
Pm012190 Prunus mume Pm012190 N 0.763
Lus10019773.g Linum usitatissimum Lus10019773.g N 0.763
chr2.CM0018.90.nc Lotus japonicus chr2.CM0018.90.nc N 0.763
30024.m001746 Ricinus communis 30024.m001746 N 0.762
PRUPE_ppa005243mg Prunus persica PRUPE_ppa005243mg N 0.760
Ca_11133 Cicer arietinum Ca_11133 N 0.760
Lus10024177.g Linum usitatissimum Lus10024177.g N 0.760
Lus10039562.g Linum usitatissimum Lus10039562.g N 0.760
MTR_5g009080 Medicago truncatula MTR_5g009080 N 0.759
Eucgr.B03716 Eucalyptus grandis Eucgr.B03716 N 0.758
evm.TU.supercontig_84.12 Carica papaya evm.TU.supercontig_84.12 N 0.758
Ca_27441 Cicer arietinum Ca_27441 N 0.756
chr3.CM0460.90.nd Lotus japonicus chr3.CM0460.90.nd N 0.753
GLYMA11G10170 Glycine max GLYMA11G10170 N 0.749
SCL3 Populus trichocarpa POPTR_0009s05330 N 0.748
SapurV1A.0415s0050 Salix purpurea SapurV1A.0415s0050 N 0.748
GLYMA12G02490 Glycine max GLYMA12G02490 N 0.744
cassava13860.valid.m1 Manihot esculenta cassava13860.valid.m1 N 0.742
PGSC0003DMG400004649 Solanum tuberosum PGSC0003DMG400004649 N 0.740
MTR_4g076140 Medicago truncatula MTR_4g076140 N 0.737
Solyc12g099900.1 Solanum lycopersicum Solyc12g099900.1 N 0.732
cassava31043.valid.m1 Manihot esculenta cassava31043.valid.m1 N 0.730
Cagra.0860s0005 Capsella grandiflora Cagra.0860s0005 N 0.730
Thhalv10011447m.g Eutrema salsugineum Thhalv10011447m.g N 0.730
Carubv10008999m.g Capsella rubella Carubv10008999m.g N 0.727
SCL3 Arabidopsis lyrata fgenesh2_kg.1__4122__AT1G50420.1 N 0.725
Gorai.013G252600 Gossypium raimondii Gorai.013G252600 N 0.723
Solyc01g008910.2 Solanum lycopersicum Solyc01g008910.2 N 0.722
SCL3 Arabidopsis thaliana AT1G50420 N 0.721
PGSC0003DMG400022709 Solanum tuberosum PGSC0003DMG400022709 N 0.719
Cla006433 Citrullus lanatus Cla006433 N 0.719
Bra018848 Brassica rapa Bra018848 N 0.714
Bostr.26675s0133 Boechera stricta Bostr.26675s0133 N 0.710
Bra014251 Brassica rapa Bra014251 N 0.702
Cucsa.055340 Cucumis sativus Cucsa.055340 N 0.700