CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
cassava18449.valid.m1
(
Manihot esculenta
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
cassava18449.valid.m1
T227051_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava18449.valid.m1
Homeodomain
277
333
HRWSAQKRLKKVHVATLERVYRRTKRPTNAMISSIVQVTNLPRKRVVKWFEDKRNED
Links
Other
Homeodomain
family TFs
Other
Manihot esculenta
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_038389
Theobroma cacao
TCM_038389
N
0.822
29848.m004652
Ricinus communis
29848.m004652
N
0.800
Gorai.004G274200
Gossypium raimondii
Gorai.004G274200
N
0.777
PRUPE_ppa007560mg
Prunus persica
PRUPE_ppa007560mg
N
0.753
Pm004594
Prunus mume
Pm004594
N
0.753
Ciclev10010768m.g
Citrus clementina
Ciclev10010768m.g
N
0.751
orange1.1g040593m.g
Citrus sinensis
orange1.1g040593m.g
N
0.751
OCP3
Vitis vinifera
VIT_04s0008g05190
N
0.745
MDP0000119866
Malus domestica
MDP0000119866
N
0.729
MDP0000202143
Malus domestica
MDP0000202143
N
0.717
chr1.CM0442.170.nd
Lotus japonicus
chr1.CM0442.170.nd
N
0.705
GLYMA04G07230
Glycine max
GLYMA04G07230
N
0.689
GLYMA06G07330
Glycine max
GLYMA06G07330
N
0.689
Aquca_001_00810
Aquilegia coerulea
Aquca_001_00810
N
0.684
PK00680.1
Cannabis sativa
PK00680.1
N
0.676
OCP3
Arabidopsis thaliana
AT5G11270
N
0.672
OCP3
Arabidopsis lyrata
fgenesh2_kg.6__1093__AT5G11270.1
N
0.672
Cagra.7526s0026
Capsella grandiflora
Cagra.7526s0026
N
0.672
Carubv10002492m.g
Capsella rubella
Carubv10002492m.g
N
0.672
Cla021272
Citrullus lanatus
Cla021272
N
0.668
Cucsa.310460
Cucumis sativus
Cucsa.310460
N
0.668
Bo9g171420
Brassica oleracea
Bo9g171420
N
0.661
Bra008975
Brassica rapa
Bra008975
N
0.661
Thhalv10013990m.g
Eutrema salsugineum
Thhalv10013990m.g
N
0.661
Bostr.23997s0022
Boechera stricta
Bostr.23997s0022
N
0.658
evm.TU.supercontig_115.10
Carica papaya
evm.TU.supercontig_115.10
N
0.656
gene11668-v1.0-hybrid
Fragaria vesca
gene11668-v1.0-hybrid
N
0.656
OB06G27850
Oryza brachyantha
OB06G27850
N
0.643
Lus10002029.g
Linum usitatissimum
Lus10002029.g
N
0.638
Solyc08g061140.2
Solanum lycopersicum
Solyc08g061140.2
N
0.628
Lus10002899.g
Linum usitatissimum
Lus10002899.g
N
0.626
OMERI06G20820
Oryza meridionalis
OMERI06G20820
N
0.625
OPUNC06G18430
Oryza punctata
OPUNC06G18430
N
0.625
mgf000632m
Mimulus guttatus
mgf000632m
N
0.624
BGIOSGA023211
Oryza indica
BGIOSGA023211
N
0.623
OBART06G20210
Oryza barthii
OBART06G20210
N
0.623
OGLUM06G21270
Oryza glumaepatula
OGLUM06G21270
N
0.623
OLONG_013537
Oryza longistaminata
OLONG_013537
N
0.623
ONIVA06G23990
Oryza nivara
ONIVA06G23990
N
0.623
ORUFI06G21620
Oryza rufipogon
ORUFI06G21620
N
0.623
OS06G0601000
Oryza sativa
OS06G0601000
N
0.623
PGSC0003DMG400020785
Solanum tuberosum
PGSC0003DMG400020785
N
0.621
GSMUA_Achr7G08370_001
Musa acuminata
GSMUA_Achr7G08370_001
N
0.612
SapurV1A.0043s0520
Salix purpurea
SapurV1A.0043s0520
N
0.607