Cagra.7526s0026 (Capsella grandiflora)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Cagra.7526s0026 T228262_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7526s0026.1.p Homeodomain 287 340

Links

Other Homeodomain family TFs
Other Capsella grandiflora TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OCP3 Arabidopsis thaliana AT5G11270 N 0.867
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N 0.867
Carubv10002492m.g Capsella rubella Carubv10002492m.g N 0.867
Bo9g171420 Brassica oleracea Bo9g171420 N 0.856
Bra008975 Brassica rapa Bra008975 N 0.856
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N 0.856
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N 0.853
PK00680.1 Cannabis sativa PK00680.1 N 0.788
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N 0.748
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N 0.736
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N 0.726
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N 0.716
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N 0.714
GLYMA04G07230 Glycine max GLYMA04G07230 N 0.710
GLYMA06G07330 Glycine max GLYMA06G07330 N 0.710
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N 0.710
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N 0.710
Cla021272 Citrullus lanatus Cla021272 N 0.705
Cucsa.310460 Cucumis sativus Cucsa.310460 N 0.705
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N 0.700
Pm004594 Prunus mume Pm004594 N 0.700
TCM_038389 Theobroma cacao TCM_038389 N 0.692
OCP3 Vitis vinifera VIT_04s0008g05190 N 0.692
MDP0000119866 Malus domestica MDP0000119866 N 0.691
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N 0.686
MDP0000202143 Malus domestica MDP0000202143 N 0.680
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N 0.679
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N 0.672
29848.m004652 Ricinus communis 29848.m004652 N 0.671
gene11668-v1.0-hybrid Fragaria vesca gene11668-v1.0-hybrid N 0.662
Lus10002029.g Linum usitatissimum Lus10002029.g N 0.645
OB06G27850 Oryza brachyantha OB06G27850 N 0.635
Lus10002899.g Linum usitatissimum Lus10002899.g N 0.633
MTR_3g107530 Medicago truncatula MTR_3g107530 N 0.631
MLOC_45474 Hordeum vulgare MLOC_45474 N 0.618
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N 0.618
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N 0.618
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N 0.618
OMERI06G20820 Oryza meridionalis OMERI06G20820 N 0.616
OPUNC06G18430 Oryza punctata OPUNC06G18430 N 0.616
BGIOSGA023211 Oryza indica BGIOSGA023211 N 0.615
OBART06G20210 Oryza barthii OBART06G20210 N 0.615
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N 0.615
OLONG_013537 Oryza longistaminata OLONG_013537 N 0.615
ONIVA06G23990 Oryza nivara ONIVA06G23990 N 0.615
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N 0.615
OS06G0601000 Oryza sativa OS06G0601000 N 0.615
SapurV1A.0043s0520 Salix purpurea SapurV1A.0043s0520 N 0.612
POPTR_0006s26790 Populus trichocarpa POPTR_0006s26790 N 0.607
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N 0.605