gene11668-v1.0-hybrid (Fragaria vesca)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 gene11668-v1.0-hybrid T228599_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna11668.1-v1.0-hybrid Homeodomain 332 384

Links

Other Homeodomain family TFs
Other Fragaria vesca TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000202143 Malus domestica MDP0000202143 N 0.771
PRUPE_ppa007560mg Prunus persica PRUPE_ppa007560mg N 0.759
Pm004594 Prunus mume Pm004594 N 0.759
Solyc08g061140.2 Solanum lycopersicum Solyc08g061140.2 N 0.756
MDP0000119866 Malus domestica MDP0000119866 N 0.751
PGSC0003DMG400020785 Solanum tuberosum PGSC0003DMG400020785 N 0.749
29848.m004652 Ricinus communis 29848.m004652 N 0.719
Lus10002899.g Linum usitatissimum Lus10002899.g N 0.714
Cla021272 Citrullus lanatus Cla021272 N 0.708
Cucsa.310460 Cucumis sativus Cucsa.310460 N 0.708
chr1.CM0442.170.nd Lotus japonicus chr1.CM0442.170.nd N 0.701
Lus10002029.g Linum usitatissimum Lus10002029.g N 0.694
GLYMA04G07230 Glycine max GLYMA04G07230 N 0.685
GLYMA06G07330 Glycine max GLYMA06G07330 N 0.685
PK00680.1 Cannabis sativa PK00680.1 N 0.684
Gorai.004G274200 Gossypium raimondii Gorai.004G274200 N 0.677
TCM_038389 Theobroma cacao TCM_038389 N 0.676
OCP3 Vitis vinifera VIT_04s0008g05190 N 0.676
evm.TU.supercontig_115.10 Carica papaya evm.TU.supercontig_115.10 N 0.676
BRADI1G36770 Brachypodium distachyon BRADI1G36770 N 0.675
OB06G27850 Oryza brachyantha OB06G27850 N 0.663
OCP3 Arabidopsis thaliana AT5G11270 N 0.662
OCP3 Arabidopsis lyrata fgenesh2_kg.6__1093__AT5G11270.1 N 0.662
Cagra.7526s0026 Capsella grandiflora Cagra.7526s0026 N 0.662
Carubv10002492m.g Capsella rubella Carubv10002492m.g N 0.662
cassava18449.valid.m1 Manihot esculenta cassava18449.valid.m1 N 0.656
Bo9g171420 Brassica oleracea Bo9g171420 N 0.652
Bra008975 Brassica rapa Bra008975 N 0.652
Thhalv10013990m.g Eutrema salsugineum Thhalv10013990m.g N 0.652
Ciclev10010768m.g Citrus clementina Ciclev10010768m.g N 0.650
orange1.1g040593m.g Citrus sinensis orange1.1g040593m.g N 0.650
Bostr.23997s0022 Boechera stricta Bostr.23997s0022 N 0.649
OMERI06G20820 Oryza meridionalis OMERI06G20820 N 0.645
OPUNC06G18430 Oryza punctata OPUNC06G18430 N 0.645
BGIOSGA023211 Oryza indica BGIOSGA023211 N 0.643
OBART06G20210 Oryza barthii OBART06G20210 N 0.643
OGLUM06G21270 Oryza glumaepatula OGLUM06G21270 N 0.643
OLONG_013537 Oryza longistaminata OLONG_013537 N 0.643
ONIVA06G23990 Oryza nivara ONIVA06G23990 N 0.643
ORUFI06G21620 Oryza rufipogon ORUFI06G21620 N 0.643
OS06G0601000 Oryza sativa OS06G0601000 N 0.643
BRADI1G58817 Brachypodium distachyon BRADI1G58817 N 0.633
GSMUA_Achr7G08370_001 Musa acuminata GSMUA_Achr7G08370_001 N 0.620
MLOC_45474 Hordeum vulgare MLOC_45474 N 0.613
Traes_7AL_0FFE02C4C Triticum aestivum Traes_7AL_0FFE02C4C N 0.613
Traes_7BL_E2E7AA383 Triticum aestivum Traes_7BL_E2E7AA383 N 0.613
Traes_7DL_613F5240E Triticum aestivum Traes_7DL_613F5240E N 0.613
Aquca_001_00810 Aquilegia coerulea Aquca_001_00810 N 0.612