gli2b (Tetraodon nigroviridis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSTNIG00000010251 T112056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLI3
M04416_2.00 		Homo sapiens
VGACCACCCACVNHG
CDNBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI3_eDBD_HT-SELEX 		0.808 0.948
GLI3
M02642_2.00 		Homo sapiens
GACCACCCANK
MNTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI3 		0.808 0.948
GLI3
M08875_2.00 		Homo sapiens
VRACCACCCAV
BTGGGTGGTYB		 Misc
Kulakovskiy et al.(2013)
GLI3_HUMAN.H11MO.0.B 		0.808 0.948
GLI3
M10167_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_01 		0.808 0.948
GLI3
M10168_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI3_Q5_01 		0.808 0.948
GLI3
M04417_2.00 		Homo sapiens
CWHBGTGGGTGGTCY
RGACCACCCACVDWG		 SELEX
Yin et al.(2017)
GLI3_eDBD_Methyl-HT-SELEX 		0.808 0.948
Gli2
M01024_2.00 		Mus musculus
NGACCACCYN
NRGGTGGTCN		 PBM
Peterson et al.(2012)
Gli2 		0.801 0.930
GLI2
M02875_2.00 		Homo sapiens
GMCCACMCANVNHB
VDNBNTGKGTGGKC		 SELEX
Jolma et al.(2013)
GLI2_1 		0.801 0.930
GLI2
M02876_2.00 		Homo sapiens
GCGACCACVCWR
YWGBGTGGTCGC		 SELEX
Jolma et al.(2013)
GLI2_2 		0.801 0.930
GLI2
M02732_2.00 		Homo sapiens
GACCACMCAN
NTGKGTGGTC		 SELEX
Jolma et al.(2010)
GLI2_monomer 		0.801 0.930
GLI2
M04402_2.00 		Homo sapiens
VGACCACCCACVDHG
CDHBGTGGGTGGTCB		 SELEX
Yin et al.(2017)
GLI2_eDBD_HT-SELEX 		0.801 0.930
GLI2
M02641_2.00 		Homo sapiens
GACCACCCAHG
CDTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI2 		0.801 0.930
GLI2
M10114_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q3 		0.801 0.930
GLI2
M10115_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI2_Q6 		0.801 0.930
GLI2
M04403_2.00 		Homo sapiens
RGACCACCCACVWWG
CWWBGTGGGTGGTCY		 SELEX
Yin et al.(2017)
GLI2_eDBD_Methyl-HT-SELEX 		0.801 0.930
Gli1
M01023_2.00 		Mus musculus
NGACCACCHN
NDGGTGGTCN		 PBM
Peterson et al.(2012)
Gli1 		0.793 0.887
GLI1
M02643_2.00 		Homo sapiens
GACCACCCAMG
CKTGGGTGGTC		 SELEX
Hallikas et al.(2006)
GLI1 		0.793 0.887
Gli1
M08976_2.00 		Mus musculus
RGRCCACCCASV
BSTGGGTGGYCY		 Misc
Kulakovskiy et al.(2013)
GLI1_MOUSE.H11MO.0.C 		0.793 0.887
GLI1
M10176_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q2 		0.793 0.887
GLI1
M10177_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3_01 		0.793 0.887
GLI1
M10178_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI1_Q3 		0.793 0.887
GLI1
M10179_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GLI_Q6 		0.793 0.887
Gli3
M01022_2.00 		Mus musculus
NGACCACCCNN
NNGGGTGGTCN		 PBM
Peterson et al.(2012)
Gli3 		0.762 0.939
Gli3
M08023_2.00 		Mus musculus
RGVCCACCCAS
STGGGTGGBCY		 ChIP-seq
Chen et al.(2011)
GSE11062_Gli3 		0.762 0.939
Gli3
M09512_2.00 		Mus musculus
RGACCACCCASR
YSTGGGTGGTCY		 Misc
Heinz et al.(2010)
Limb-GLI3_GSE11077 		0.762 0.939
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000013152 C2H2 ZF 380 405
ENSTNIP00000013152 C2H2 ZF 413 440
ENSTNIP00000013152 C2H2 ZF 446 470
ENSTNIP00000013152 C2H2 ZF 476 501
ENSTNIP00000013152 C2H2 ZF 507 532
ENSTNIP00000013153 C2H2 ZF 375 400
ENSTNIP00000013153 C2H2 ZF 408 435
ENSTNIP00000013153 C2H2 ZF 441 465
ENSTNIP00000013153 C2H2 ZF 471 496
ENSTNIP00000013153 C2H2 ZF 502 527

Links

Other C2H2 ZF family TFs
Other Tetraodon nigroviridis TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000003125 Astyanax mexicanus ENSAMXG00000003125 I 0.815
ENSAMXG00000006646 Astyanax mexicanus ENSAMXG00000006646 I 0.815
gli2b Danio rerio ENSDARG00000020884 I 0.815
GLI2 Tursiops truncatus ENSTTRG00000002058 I 0.815
Ogr02489 Ophisaurus gracilis Ogr02489 I 0.815
GLI2 Anolis carolinensis ENSACAG00000004133 I 0.815
Pvit_06470 Pogona vitticeps Pvit_06470 I 0.815
gli2b Takifugu rubripes ENSTRUG00000010444 I 0.815
ENSFALG00000013217 Ficedula albicollis ENSFALG00000013217 I 0.813
Gfo_R001212 Geospiza fortis Gfo_R001212 I 0.813
ENSPSIG00000008752 Pelodiscus sinensis ENSPSIG00000008752 I 0.813
Cmyd_10009086 Chelonia mydas Cmyd_10009086 I 0.813
ENSXMAG00000006443 Xiphophorus maculatus ENSXMAG00000006443 I 0.813
ENSPFOG00000005116 Poecilia formosa ENSPFOG00000005116 I 0.813
GLI2 Taeniopygia guttata ENSTGUG00000004599 I 0.813
GLI2 Meleagris gallopavo ENSMGAG00000011872 I 0.813
Tal_R006208 Tyto alba Tal_R006208 I 0.813
Afo_R006826 Aptenodytes forsteri Afo_R006826 I 0.813
Aan_R003640 Calypte anna Aan_R003640 I 0.813
GLI2 Gallus gallus ENSGALG00000011630 I 0.813
Brh_R010932 Buceros rhinoceros Brh_R010932 I 0.813
ENSAPLG00000015141 Anas platyrhynchos ENSAPLG00000015141 I 0.813
ENSECAG00000008016 Equus caballus ENSECAG00000008016 I 0.811
gli3 Danio rerio ENSDARG00000052131 I 0.810
ENSAMXG00000002477 Astyanax mexicanus ENSAMXG00000002477 I 0.808
GLI3 Meleagris gallopavo ENSMGAG00000012277 I 0.808
GLI3 Tursiops truncatus ENSTTRG00000003628 I 0.808
GLI3 Monodelphis domestica ENSMODG00000002714 I 0.808
GLI3 Macaca mulatta ENSMMUG00000013614 I 0.808
GLI3 Myotis lucifugus ENSMLUG00000015711 I 0.808
GLI3 Pan troglodytes ENSPTRG00000019117 I 0.808
ENSAPLG00000004361 Anas platyrhynchos ENSAPLG00000004361 I 0.808
GLI3 Gorilla gorilla ENSGGOG00000002026 I 0.808
Brh_R008256 Buceros rhinoceros Brh_R008256 I 0.808
ENSPSIG00000017804 Pelodiscus sinensis ENSPSIG00000017804 I 0.808
Afo_R007816 Aptenodytes forsteri Afo_R007816 I 0.808
Pvit_19093 Pogona vitticeps Pvit_19093 I 0.808
GLI3 Loxodonta africana ENSLAFG00000008944 I 0.808
ENSMEUG00000013134 Macropus eugenii ENSMEUG00000013134 I 0.808
ENSTSYG00000009406 Tarsius syrichta ENSTSYG00000009406 I 0.808
GLI3 Pteropus vampyrus ENSPVAG00000015920 I 0.808
GLI3 Otolemur garnettii ENSOGAG00000012651 I 0.808
GLI3 Tupaia belangeri ENSTBEG00000006673 I 0.808
GLI3 Procavia capensis ENSPCAG00000015092 I 0.808
ENSSHAG00000009727 Sarcophilus harrisii ENSSHAG00000009727 I 0.808
ENSPANG00000014545 Papio anubis ENSPANG00000014545 I 0.808
GLI3 Ochotona princeps ENSOPRG00000011225 I 0.808
GLI3 Oryctolagus cuniculus ENSOCUG00000006563 I 0.808
ENSOARG00000017420 Ovis aries ENSOARG00000017420 I 0.808
ENSAMEG00000008405 Ailuropoda melanoleuca ENSAMEG00000008405 I 0.808
ENSMPUG00000018143 Mustela putorius furo ENSMPUG00000018143 I 0.808
ENSNLEG00000003160 Nomascus leucogenys ENSNLEG00000003160 I 0.808
XP_002933450 Xenopus tropicalis XP_002933450 I 0.808
GLI3 Anolis carolinensis ENSACAG00000017547 I 0.808
GLI3 Ornithorhynchus anatinus ENSOANG00000010699 I 0.808
ENSGALG00000012329 Gallus gallus ENSGALG00000012329 I 0.808
Aan_R014715 Calypte anna Aan_R014715 I 0.808
GLI3 Equus caballus ENSECAG00000009281 I 0.808
ENSP00000379258 Macaca fascicularis ENSP00000379258 I 0.808
ENSPPYG00000017613 Pongo abelii ENSPPYG00000017613 I 0.808
ENSFALG00000005113 Ficedula albicollis ENSFALG00000005113 I 0.808
GLI3 Dasypus novemcinctus ENSDNOG00000049286 I 0.808
Gfo_R007869 Geospiza fortis Gfo_R007869 I 0.808
GLI3 Callithrix jacchus ENSCJAG00000007690 I 0.808
GLI3 Choloepus hoffmanni ENSCHOG00000003774 I 0.808
ENSCSAG00000015361 Chlorocebus sabaeus ENSCSAG00000015361 I 0.808
GLI3 Canis familiaris ENSCAFG00000003535 I 0.808
GLI3 Felis catus ENSFCAG00000011989 I 0.808
gli3.L Xenopus laevis XB-GENE-865509 I 0.808
GLI3 Homo sapiens ENSG00000106571 D 0.808
GLI3 Bos taurus ENSBTAG00000010671 I 0.808
Cmyd_10007839 Chelonia mydas Cmyd_10007839 I 0.808
XP_002933449 Xenopus tropicalis XP_002933449 I 0.808
ENSLACG00000017364 Latimeria chalumnae ENSLACG00000017364 I 0.807
gli2b Tetraodon nigroviridis ENSTNIG00000017828 I 0.806
Tal_R009020 Tyto alba Tal_R009020 I 0.805
Pvit_05813 Pogona vitticeps Pvit_05813 I 0.805
ENSAPLG00000005128 Anas platyrhynchos ENSAPLG00000005128 I 0.805
GLI1 Anolis carolinensis ENSACAG00000006541 I 0.805
Gfo_R013682 Geospiza fortis Gfo_R013682 I 0.805
GLI2 Monodelphis domestica ENSMODG00000000245 I 0.803
ENSAMXG00000017236 Astyanax mexicanus ENSAMXG00000017236 I 0.803
ENSLOCG00000005938 Lepisosteus oculatus ENSLOCG00000005938 I 0.803
ENSSHAG00000004233 Sarcophilus harrisii ENSSHAG00000004233 I 0.803
ENSCSAG00000016668 Chlorocebus sabaeus ENSCSAG00000016668 I 0.801
ENSPANG00000024168 Papio anubis ENSPANG00000024168 I 0.801
GLI2 Oryctolagus cuniculus ENSOCUG00000000638 I 0.801
ENSCJAG00000013342 Callithrix jacchus ENSCJAG00000013342 I 0.801
ENSSTOG00000004582 Ictidomys tridecemlineatus ENSSTOG00000004582 I 0.801
GLI2 Cavia porcellus ENSCPOG00000015189 I 0.801
GLI2 Sus scrofa ENSSSCG00000015733 I 0.801
Gli2 Rattus norvegicus ENSRNOG00000007261 I 0.801
Myotis_brandtii_Gli2_10019076 Myotis brandtii Myotis_brandtii_Gli2_10019076 I 0.801
GLI2 Dasypus novemcinctus ENSDNOG00000008730 I 0.801
ENSP00000390436-D1 Bos grunniens ENSP00000390436-D1 I 0.801
ENSAMEG00000008708 Ailuropoda melanoleuca ENSAMEG00000008708 I 0.801
GLI2 Macaca mulatta ENSMMUG00000001868 I 0.801
GLI2 Homo sapiens ENSG00000074047 D 0.801
ENSMMUP00000002494 Macaca fascicularis ENSMMUP00000002494 I 0.801
GLI2 Bos taurus ENSBTAG00000011682 I 0.801
ENSOARG00000013052 Ovis aries ENSOARG00000013052 I 0.801
ENSMPUG00000000986 Mustela putorius furo ENSMPUG00000000986 I 0.801
GLI2 Felis catus ENSFCAG00000014531 I 0.801
GLI2 Canis familiaris ENSCAFG00000004821 I 0.801
ENSNLEG00000000944 Nomascus leucogenys ENSNLEG00000000944 I 0.801
GLI2 Pan troglodytes ENSPTRG00000012413 I 0.801
ENSPPYG00000012778 Pongo abelii ENSPPYG00000012778 I 0.801
Gli2 Mus musculus ENSMUSG00000048402 D 0.801
ENSLOCG00000011983 Lepisosteus oculatus ENSLOCG00000011983 I 0.798
GLI2 Procavia capensis ENSPCAG00000001704 I 0.798
GLI2 Gorilla gorilla ENSGGOG00000009653 I 0.797
ENSMGAG00000003540 Meleagris gallopavo ENSMGAG00000003540 I 0.795
ENSGALG00000014639 Gallus gallus ENSGALG00000014639 I 0.795
GLI2 Otolemur garnettii ENSOGAG00000032438 I 0.795
Myotis_brandtii_GLI1_10018379 Myotis brandtii Myotis_brandtii_GLI1_10018379 I 0.793
GLI1 Pan troglodytes ENSPTRG00000005133 I 0.793
ENSBTAP00000008704-D1 Bos grunniens ENSBTAP00000008704-D1 I 0.793
ENSP00000228682 Macaca fascicularis ENSP00000228682 I 0.793
GLI1 Pteropus vampyrus ENSPVAG00000012109 I 0.793
ENSSHAG00000006652 Sarcophilus harrisii ENSSHAG00000006652 I 0.793
ENSSTOG00000020366 Ictidomys tridecemlineatus ENSSTOG00000020366 I 0.793
GLI1 Tursiops truncatus ENSTTRG00000013086 I 0.793
Gli1 Rattus norvegicus ENSRNOG00000025120 I 0.793
ENSOARG00000006674 Ovis aries ENSOARG00000006674 I 0.793
GLI1 Gorilla gorilla ENSGGOG00000001974 I 0.793
GLI1 Homo sapiens ENSG00000111087 D 0.793
GLI1 Felis catus ENSFCAG00000002081 I 0.793
GLI1 Loxodonta africana ENSLAFG00000022910 I 0.793
ENSPPYG00000004689 Pongo abelii ENSPPYG00000004689 I 0.793
ENSMPUG00000001825 Mustela putorius furo ENSMPUG00000001825 I 0.793
GLI1 Macaca mulatta ENSMMUG00000022058 I 0.793
GLI1 Myotis lucifugus ENSMLUG00000001013 I 0.793
GLI1 Equus caballus ENSECAG00000011246 I 0.793
Gli1 Dipodomys ordii ENSDORG00000007124 I 0.793
GLI1 Canis familiaris ENSCAFG00000000223 I 0.793
GLI1 Bos taurus ENSBTAG00000006631 I 0.793
ENSAMEG00000004878 Ailuropoda melanoleuca ENSAMEG00000004878 I 0.793
GLI1 Callithrix jacchus ENSCJAG00000007324 I 0.793
GLI1 Cavia porcellus ENSCPOG00000005414 I 0.793
GLI1 Dasypus novemcinctus ENSDNOG00000017512 I 0.793
gli1 Danio rerio ENSDARG00000101244 I 0.793
ENSCSAG00000004897 Chlorocebus sabaeus ENSCSAG00000004897 I 0.793
Gli1 Mus musculus ENSMUSG00000025407 D 0.793
ENSMEUG00000009702 Macropus eugenii ENSMEUG00000009702 I 0.793
GLI1 Otolemur garnettii ENSOGAG00000005219 I 0.793
GLI1 Ochotona princeps ENSOPRG00000006483 I 0.793
ENSPANG00000017044 Papio anubis ENSPANG00000017044 I 0.793
ENSNLEG00000017337 Nomascus leucogenys ENSNLEG00000017337 I 0.793
GLI1 Oryctolagus cuniculus ENSOCUG00000011128 I 0.793
GLI3 Echinops telfairi ENSETEG00000003955 I 0.792
GLI3 Microcebus murinus ENSMICG00000010785 I 0.792
GLI1 Echinops telfairi ENSETEG00000006674 I 0.791
ENSCSAVG00000009575 Ciona savignyi ENSCSAVG00000009575 I 0.783
ENSCING00000012018 Ciona intestinalis ENSCING00000012018 I 0.783
ENSONIG00000006298 Oreochromis niloticus ENSONIG00000006298 I 0.780
ENSPFOG00000019294 Poecilia formosa ENSPFOG00000019294 I 0.780
gli2b Oryzias latipes ENSORLG00000012490 I 0.780
ENSGACG00000004834 Gasterosteus aculeatus ENSGACG00000004834 I 0.780
ENSXMAG00000001777 Xiphophorus maculatus ENSXMAG00000001777 I 0.780
GLI1 Procavia capensis ENSPCAG00000015756 I 0.779
gli2b Takifugu rubripes ENSTRUG00000007692 I 0.778
gli2b Tetraodon nigroviridis ENSTNIG00000013668 I 0.778
ENSONIG00000004472 Oreochromis niloticus ENSONIG00000004472 I 0.769
gli2b Gasterosteus aculeatus ENSGACG00000001547 I 0.769
ENSLOCG00000002028 Lepisosteus oculatus ENSLOCG00000002028 I 0.769
ENSPFOG00000014778 Poecilia formosa ENSPFOG00000014778 I 0.767
ENSGMOG00000010335 Gadus morhua ENSGMOG00000010335 I 0.767
ENSONIG00000003608 Oreochromis niloticus ENSONIG00000003608 I 0.767
gli2a Danio rerio ENSDARG00000025641 I 0.765
ENSCJAG00000003076 Callithrix jacchus ENSCJAG00000003076 I 0.763
Gli3 Rattus norvegicus ENSRNOG00000014395 I 0.762
GLI3 Cavia porcellus ENSCPOG00000013233 I 0.762
Gli3 Mus musculus ENSMUSG00000021318 D 0.762
ENSTGUG00000001834 Taeniopygia guttata ENSTGUG00000001834 I 0.762
ENSSTOG00000020844 Ictidomys tridecemlineatus ENSSTOG00000020844 I 0.762
ENSPFOG00000006269 Poecilia formosa ENSPFOG00000006269 I 0.761
ENSONIG00000005084 Oreochromis niloticus ENSONIG00000005084 I 0.761
ENSXMAG00000017965 Xiphophorus maculatus ENSXMAG00000017965 I 0.761
gli1 Oryzias latipes ENSORLG00000005455 I 0.761
HelroG111329 Helobdella robusta HelroG111329 I 0.760
ENSGMOG00000007975 Gadus morhua ENSGMOG00000007975 I 0.759
gli2b Takifugu rubripes ENSTRUG00000001954 I 0.759
gli1.S Xenopus laevis XB-GENE-864895 I 0.759
gli1 Xenopus tropicalis XB-GENE-482644 I 0.759
gli1 Takifugu rubripes ENSTRUG00000014998 I 0.759
gli1 Gasterosteus aculeatus ENSGACG00000006458 I 0.759
gli1 Tetraodon nigroviridis ENSTNIG00000007058 I 0.756