NEMVEDRAFT_v1g182742 (Nematostella vectensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 NEMVEDRAFT_v1g182742 T124199_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.766 0.806
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.766 0.806
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.766 0.806
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.766 0.806
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.766 0.806
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.766 0.806
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.766 0.806
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.766 0.806
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.766 0.806
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.766 0.806
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.764 0.776
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO44302 C2H2 ZF 2 21
EDO44302 C2H2 ZF 27 49
EDO44302 C2H2 ZF 55 77
EDO44302 C2H2 ZF 83 105
EDO44302 C2H2 ZF 111 133
EDO44302 C2H2 ZF 139 161

Links

Other C2H2 ZF family TFs
Other Nematostella vectensis TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.780
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.776
Aan_R008865 Calypte anna Aan_R008865 I 0.776
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.776
GFI1B Gallus gallus ENSGALG00000003478 I 0.776
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.776
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.776
Tal_R001363 Tyto alba Tal_R001363 I 0.776
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.776
GFI1B Bos taurus ENSBTAG00000012772 I 0.776
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.776
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.776
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.773
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.773
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.773
gfi1b Danio rerio ENSDARG00000079947 I 0.770
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.770
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.769
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.769
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.768
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.766
GFI1B Sus scrofa ENSSSCG00000005737 I 0.766
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.766
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.766
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.766
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.766
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.766
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.766
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.766
GFI1B Equus caballus ENSECAG00000008127 I 0.766
GFI1B Felis catus ENSFCAG00000027147 I 0.766
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.766
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.766
Gfi1b Mus musculus ENSMUSG00000026815 D 0.766
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.766
GFI1B Homo sapiens ENSG00000165702 D 0.766
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.766
GFI1B Canis familiaris ENSCAFG00000019877 I 0.766
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.766
LotgiG83709 Lottia gigantea LotgiG83709 I 0.765
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.765
GJ21268 Drosophila virilis FBgn0208401 I 0.764
GK24242 Drosophila willistoni FBgn0226203 I 0.764
GE14143 Drosophila yakuba FBgn0231766 I 0.764
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.764
MDOA011065 Musca domestica MDOA011065 I 0.764
GM16223 Drosophila sechellia FBgn0171139 I 0.764
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.764
GH13715 Drosophila grimshawi FBgn0121191 I 0.764
GL26188 Drosophila persimilis FBgn0163770 I 0.764
sens-2 Drosophila melanogaster FBgn0051632 D 0.764
GF15430 Drosophila ananassae FBgn0092455 I 0.764
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.764
GI23984 Drosophila mojavensis FBgn0146708 I 0.764
GG10437 Drosophila erecta FBgn0102746 I 0.764
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.762
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.762
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.762
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.761
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.761
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.761
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.760
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.759
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.758
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.758
GFI1B Procavia capensis ENSPCAG00000012329 I 0.758
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.758
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.758
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.758