GFI1B (Monodelphis domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSMODG00000012600 T099991_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GFI1B
M00240_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_REF
0.819 0.949
GFI1B
M04523_2.00
Homo sapiens
NMAATCASDGCNNBBCACTNN

NNAGTGVVNNGCHSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX
0.819 0.949
GFI1B
M08909_2.00
Homo sapiens
MAATCWSDGY

RCHSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A
0.819 0.949
GFI1B
M10243_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_01
0.819 0.949
GFI1B
M10244_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1B_Q6
0.819 0.949
GFI1B
M04524_2.00
Homo sapiens
NMAATCASWGCDNNBCACTHN

NDAGTGVNNHGCWSTGATTKN
SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX
0.819 0.949
Gfi1b
M08098_2.00
Mus musculus
MAATCWCWGCH

DGCWGWGATTK
ChIP-seq
Mathelier et al.(2014)
MA0483.1
0.817 0.942
Gfi1b
M08977_2.00
Mus musculus
MAAYCACWGH

DCWGWGRTTK
Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A
0.817 0.942
Gfi1b
M09514_2.00
Mus musculus
MAATCWSWGC

GCWSWGATTK
Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178
0.817 0.942
GFI1B
M00239_2.00
Homo sapiens
NNAAATCWSDN

NHSWGATTTNN
PBM
Barrera et al.(2016)
GFI1B_A204T
0.809 0.942
sens-2
M06165_2.00
Drosophila melanogaster
RYAAATCWSDGCAYNC

GNRTGCHSWGATTTRY
B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632
0.784 0.848
GFI1
M00238_2.00
Homo sapiens
NWAWMNNNN

NNNNKWTWN
PBM
Barrera et al.(2016)
GFI1_REF
0.783 0.891
GFI1
M04507_2.00
Homo sapiens
BMAATCACDGCNHBBCACTMN

NKAGTGVVDNGCHGTGATTKV
SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX
0.783 0.891
Gfi1
M02668_2.00
Rattus norvegicus
NMAATCWVHS

SDBWGATTKN
SELEX
Mathelier et al.(2014)
MA0038.1
0.783 0.891
GFI1
M08905_2.00
Homo sapiens
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C
0.783 0.891
Gfi1
M08984_2.00
Mus musculus
MAATCWSWGY

RCWSWGATTK
Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C
0.783 0.891
GFI1
M10235_2.00
Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN

NNNVNNHAAATCWSDGYNNNNNNN
Transfac
Matys et al.(2006)
V$GFI1_01
0.783 0.891
GFI1
M10236_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GFI1_Q6_01
0.783 0.891
GFI1
M04508_2.00
Homo sapiens
NNAGTGVVNHGCWSTGATTKV

BMAATCASWGCDNBBCACTNN
SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX
0.783 0.891
GFI1
M00236_2.00
Homo sapiens
NAATMNNNN

NNNNKATTN
PBM
Barrera et al.(2016)
GFI1_L400F
0.781 0.884
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000015764 C2H2 ZF 156 179
ENSMODP00000015764 C2H2 ZF 185 207
ENSMODP00000015764 C2H2 ZF 246 268
ENSMODP00000015764 C2H2 ZF 274 296
ENSMODP00000015764 C2H2 ZF 302 324
ENSMODP00000015764 C2H2 ZF 330 353

Links

Other C2H2 ZF family TFs
Other Monodelphis domestica TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.819
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.819
GFI1B Gallus gallus ENSGALG00000003478 I 0.819
GFI1B Homo sapiens ENSG00000165702 D 0.819
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.819
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.819
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.819
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.819
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.819
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.819
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.819
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.819
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.819
Aan_R008865 Calypte anna Aan_R008865 I 0.819
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.819
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.819
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.817
GFI1B Felis catus ENSFCAG00000027147 I 0.817
GFI1B Sus scrofa ENSSSCG00000005737 I 0.817
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.817
Gfi1b Mus musculus ENSMUSG00000026815 D 0.817
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.817
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.817
Tal_R001363 Tyto alba Tal_R001363 I 0.815
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.815
GFI1B Canis familiaris ENSCAFG00000019877 I 0.815
GFI1B Equus caballus ENSECAG00000008127 I 0.815
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.815
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.814
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.813
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.811
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.810
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.810
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.809
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.809
GFI1B Procavia capensis ENSPCAG00000012329 I 0.809
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.807
GFI1B Bos taurus ENSBTAG00000012772 I 0.805
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.805
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.805
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.797
gfi1b Danio rerio ENSDARG00000079947 I 0.797
Myotis_brandtii_GFI1B_10010118 Myotis brandtii Myotis_brandtii_GFI1B_10010118 I 0.796
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.796
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.795
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.794
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.794
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.786
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.786
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.786
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.785
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.785
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.785
GFI1 Sus scrofa ENSSSCG00000006902 I 0.785
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.785
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.785
GFI1 Equus caballus ENSECAG00000006647 I 0.785
gfi1aa Danio rerio ENSDARG00000020746 I 0.785
GFI1 Bos taurus ENSBTAG00000016723 I 0.785
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.785
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.784
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.784
GK24242 Drosophila willistoni FBgn0226203 I 0.784
GE14143 Drosophila yakuba FBgn0231766 I 0.784
MDOA011065 Musca domestica MDOA011065 I 0.784
GL26188 Drosophila persimilis FBgn0163770 I 0.784
GM16223 Drosophila sechellia FBgn0171139 I 0.784
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.784
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.784
GJ21268 Drosophila virilis FBgn0208401 I 0.784
sens-2 Drosophila melanogaster FBgn0051632 D 0.784
GG10437 Drosophila erecta FBgn0102746 I 0.784
GI23984 Drosophila mojavensis FBgn0146708 I 0.784
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.784
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.784
GF15430 Drosophila ananassae FBgn0092455 I 0.784
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.784
gfi1b Oryzias latipes ENSORLG00000014390 I 0.784
GH13715 Drosophila grimshawi FBgn0121191 I 0.784
Aan_R000889 Calypte anna Aan_R000889 I 0.783
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.783
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.783
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.783
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.783
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.783
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.783
Tal_R006464 Tyto alba Tal_R006464 I 0.783
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.783
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.783
GFI1 Homo sapiens ENSG00000162676 D 0.783
GFI1 Felis catus ENSFCAG00000005914 I 0.783
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.783
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.783
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.783
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.783
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.783
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.783
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.783
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.783
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.783
GFI1 Canis familiaris ENSCAFG00000020155 I 0.783
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.783
gfi1ab Danio rerio ENSDARG00000044457 I 0.783
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.783
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.783
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.783
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.783
Gfi1 Mus musculus ENSMUSG00000029275 D 0.783
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.783
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.783
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.783
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.783
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.783
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.783
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.783
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.782
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.781
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.781
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.779
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.778
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.775
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.775
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.775
e_gw.11.853.1 Branchiostoma floridae e_gw.11.853.1 I 0.774
NEMVEDRAFT_v1g182742 Nematostella vectensis NEMVEDRAFT_v1g182742 I 0.773
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.772
LotgiG83709 Lottia gigantea LotgiG83709 I 0.770
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.769
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.769
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.769
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.769
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.768
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.768
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.768
LotgiG129344 Lottia gigantea LotgiG129344 I 0.768
CapteG45287 Capitella teleta CapteG45287 I 0.755