estExt_fgenesh2_kg.C_190001 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 estExt_fgenesh2_kg.C_190001 T138566_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
esg
M06050_2.00 		Drosophila melanogaster
CACCTGH
DCAGGTG		 B1H
Zhu et al.(2011)
esg_SANGER_2.5_FBgn0001981 		0.780 0.858
wor
M03664_2.00 		Drosophila melanogaster
GYRACAGGTGYAH
DTRCACCTGTYRC		 SELEX
Nitta et al.(2015)
wor_1 		0.759 0.805
wor
M03665_2.00 		Drosophila melanogaster
DTRCACCTGTYGY
RCRACAGGTGYAH		 SELEX
Nitta et al.(2015)
wor_2 		0.759 0.805
wor
M06051_2.00 		Drosophila melanogaster
CACCTGY
RCAGGTG		 B1H
Zhu et al.(2011)
wor_SANGER_2.5_FBgn0001983 		0.759 0.805
wor
M06052_2.00 		Drosophila melanogaster
VCACCTGY
RCAGGTGB		 B1H
Zhu et al.(2011)
wor_SOLEXA_2.5_FBgn0001983 		0.759 0.805
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_kg.C_190001 C2H2 ZF 112 134
estExt_fgenesh2_kg.C_190001 C2H2 ZF 143 165
estExt_fgenesh2_kg.C_190001 C2H2 ZF 169 191
estExt_fgenesh2_kg.C_190001 C2H2 ZF 197 219
estExt_fgenesh2_kg.C_190001 C2H2 ZF 225 245

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sakowv30043351m.g Saccoglossus kowalevskii Sakowv30043351m.g I 0.785
LCUP013268 Lucilia cuprina LCUP013268 I 0.785
MDOA014024 Musca domestica MDOA014024 I 0.785
GH13754 Drosophila grimshawi FBgn0121230 I 0.783
GI17894 Drosophila mojavensis FBgn0140635 I 0.783
GJ17399 Drosophila virilis FBgn0204571 I 0.783
GK18133 Drosophila willistoni FBgn0220132 I 0.783
L798_10614 Zootermopsis nevadensis L798_10614 I 0.783
NV17743 Nasonia vitripennis NV17743 I 0.782
CLEC007039 Cimex lectularius CLEC007039 I 0.782
YQE_07640 Dendroctonus ponderosae YQE_07640 I 0.781
PHUM091060 Pediculus humanus PHUM091060 I 0.780
GF15382 Drosophila ananassae FBgn0092407 I 0.780
GG25158 Drosophila erecta FBgn0117283 I 0.780
GD24004 Drosophila simulans FBgn0195364 I 0.780
GL26425 Drosophila persimilis FBgn0164007 I 0.780
GA17666 Drosophila pseudoobscura FBgn0077676 I 0.780
HHAL006775-PA Halyomorpha halys HHAL006775-PA I 0.780
esg Drosophila melanogaster FBgn0001981 D 0.780
GE20968 Drosophila yakuba FBgn0238253 I 0.780
SMAR001730 Strigamia maritima SMAR001730 I 0.777
LDEC001157 Leptinotarsa decemlineata LDEC001157 I 0.775
RPRC005707 Rhodnius prolixus RPRC005707 I 0.775
SMAR001314 Strigamia maritima SMAR001314 I 0.775
TC014474 Tribolium castaneum TC014474 I 0.772
MCINX001355 Melitaea cinxia MCINX001355 I 0.771
PPAI008011 Phlebotomus papatasi PPAI008011 I 0.771
KGM_17970 Danaus plexippus KGM_17970 I 0.771
HMEL002306 Heliconius melpomene HMEL002306 I 0.771
Cflo_07707--XP_393944.1_APIME Camponotus floridanus Cflo_07707--XP_393944.1_APIME I 0.771
BGIBMGA006230 Bombyx mori BGIBMGA006230 I 0.769
LotgiG114290 Lottia gigantea LotgiG114290 I 0.769
LCUP006862 Lucilia cuprina LCUP006862 I 0.765
MDOA006149 Musca domestica MDOA006149 I 0.765
CGI_10027813 Crassostrea gigas CGI_10027813 I 0.763
snai2 Tetraodon nigroviridis ENSTNIG00000008504 I 0.761
snai2 Oryzias latipes ENSORLG00000017475 I 0.761
snai2 Takifugu rubripes ENSTRUG00000006860 I 0.761
ENSPFOG00000014336 Poecilia formosa ENSPFOG00000014336 I 0.761
ENSXMAG00000019030 Xiphophorus maculatus ENSXMAG00000019030 I 0.761
ENSLOCG00000005992 Lepisosteus oculatus ENSLOCG00000005992 I 0.761
ENSONIG00000009542 Oreochromis niloticus ENSONIG00000009542 I 0.761
ENSGMOG00000002669 Gadus morhua ENSGMOG00000002669 I 0.761
tetur13g00760 Tetranychus urticae tetur13g00760 I 0.760
GD21956 Drosophila simulans FBgn0193371 I 0.759
GF14525 Drosophila ananassae FBgn0091552 I 0.759
GG24207 Drosophila erecta FBgn0116339 I 0.759
GA17994 Drosophila pseudoobscura FBgn0078003 I 0.759
wor Drosophila melanogaster FBgn0001983 D 0.759
snai2 Danio rerio ENSDARG00000040046 I 0.759
snai2 Gasterosteus aculeatus ENSGACG00000017935 I 0.759
GE19402 Drosophila yakuba FBgn0236745 I 0.759
GH13119 Drosophila grimshawi FBgn0120596 I 0.759
GK18253 Drosophila willistoni FBgn0220252 I 0.759
GI22651 Drosophila mojavensis FBgn0145379 I 0.759
GJ23203 Drosophila virilis FBgn0210305 I 0.759
GM14357 Drosophila sechellia FBgn0169282 I 0.759
GL26594 Drosophila persimilis FBgn0164176 I 0.759
ENSLACG00000004705 Latimeria chalumnae ENSLACG00000004705 I 0.758
ACEP13085 Atta cephalotes ACEP13085 I 0.757
SINV14155 Solenopsis invicta SINV14155 I 0.757
CapteG76255 Capitella teleta CapteG76255 I 0.756