CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bo7g059410
(
Brassica oleracea
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Bo7g059410
T199945_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bo7g059410.1
GRAS
178
550
PKQILISCARALSEGKSEEALSMLNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFLYRALKCKEPPSDERLAAMQVLFEACPCFKFGFLAANGAIVESIRDEKEVHIIDFDINQGNQYMTLIRTIAELPGKGPRLRLTGIDDPESVQRSVGGLRIIGLRLEQLAKDHGVSFKFKAVASKTSLIVSPSTLGCKPGEALIVNFAFQLHHMPDESVTIVNQRDELLHMVKGLNPKLVTVVEQDVNTNTSPFFPRFMEAYEYYSAVFESLDVTLPRDSQERMNVERQCLARDIVNVVACEGEERIERYEVAGKWRARMMMAGFSSRPMSSRVTRSIQSLLKEEYCSKYKVKEEMGELLFCWEDKSLIVASAWR
Links
Other
GRAS
family TFs
Other
Brassica oleracea
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bra012280
Brassica rapa
Bra012280
N
0.943
Bo5g034360
Brassica oleracea
Bo5g034360
N
0.898
Bra017915
Brassica rapa
Bra017915
N
0.889
Bostr.25570s0024
Boechera stricta
Bostr.25570s0024
N
0.884
SCL1
Arabidopsis lyrata
fgenesh2_kg.1__2335__AT1G21450.1
N
0.884
SCL1
Arabidopsis thaliana
AT1G21450
N
0.884
Cagra.1632s0036
Capsella grandiflora
Cagra.1632s0036
N
0.881
Thhalv10007142m.g
Eutrema salsugineum
Thhalv10007142m.g
N
0.879
Carubv10008658m.g
Capsella rubella
Carubv10008658m.g
N
0.878
evm.TU.supercontig_26.96
Carica papaya
evm.TU.supercontig_26.96
N
0.769
chr1.CM0982.460.nd
Lotus japonicus
chr1.CM0982.460.nd
N
0.767
gene01015-v1.0-hybrid
Fragaria vesca
gene01015-v1.0-hybrid
N
0.755
TCM_035362
Theobroma cacao
TCM_035362
N
0.752
orange1.1g007853m.g
Citrus sinensis
orange1.1g007853m.g
N
0.749
Ciclev10000671m.g
Citrus clementina
Ciclev10000671m.g
N
0.749
Gorai.005G083700
Gossypium raimondii
Gorai.005G083700
N
0.747
MDP0000727836
Malus domestica
MDP0000727836
N
0.743
Pm022704
Prunus mume
Pm022704
N
0.743
Gorai.009G251800
Gossypium raimondii
Gorai.009G251800
N
0.741
29648.m001919
Ricinus communis
29648.m001919
N
0.741
PRUPE_ppa003310mg
Prunus persica
PRUPE_ppa003310mg
N
0.741
MDP0000859087
Malus domestica
MDP0000859087
N
0.740
PK29476.1
Cannabis sativa
PK29476.1
N
0.737
MTR_1g029420
Medicago truncatula
MTR_1g029420
N
0.725
cassava26784.m1
Manihot esculenta
cassava26784.m1
N
0.722
MTR_3g089055
Medicago truncatula
MTR_3g089055
N
0.722
SapurV1A.0261s0120
Salix purpurea
SapurV1A.0261s0120
N
0.717
cassava42388.valid.m1
Manihot esculenta
cassava42388.valid.m1
N
0.717
POPTR_0002s07430
Populus trichocarpa
POPTR_0002s07430
N
0.717
SapurV1A.0267s0240
Salix purpurea
SapurV1A.0267s0240
N
0.717
GLYMA06G12701
Glycine max
GLYMA06G12701
N
0.716
GLYMA14G27290
Glycine max
GLYMA14G27290
N
0.714
VIT_04s0044g01370
Vitis vinifera
VIT_04s0044g01370
N
0.712
GLYMA13G09220
Glycine max
GLYMA13G09220
N
0.709
POPTR_0005s20890
Populus trichocarpa
POPTR_0005s20890
N
0.707
GLYMA04G42090
Glycine max
GLYMA04G42090
N
0.706