CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
PAX4
(
Sus scrofa
)
Homeodomain,Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
PF00292 (PAX)
IPR001356
IPR001523
ENSSSCG00000016591
T237496_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PAX4
M00350_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF
0.943
0.943
PAX4
M00351_2.00
Homo sapiens
NNNATTAN
NTAATNNN
PBM
Barrera et al.(2016)
PAX4_REF_R3
0.943
0.943
PAX4
M03295_2.00
Homo sapiens
HKAATTAR
YTAATTMD
SELEX
Jolma et al.(2013)
PAX4_1
0.943
0.943
PAX4
M03296_2.00
Homo sapiens
YKAATTAV
BTAATTMR
SELEX
Jolma et al.(2013)
PAX4_2
0.943
0.943
PAX4
M03883_2.00
Homo sapiens
SGTCACGCWTSRNTG
CANYSAWGCGTGACS
SELEX
Nitta et al.(2015)
PAX4_1
0.943
0.943
PAX4
M03884_2.00
Homo sapiens
NNAATTANYKAATDMV
BKHATTMRNTAATTNN
SELEX
Nitta et al.(2015)
PAX4_2
0.943
0.943
PAX4
M05430_2.00
Homo sapiens
NAATTANNNNNNVNTAATTN
NAATTANBNNNNNNTAATTN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_1
0.943
0.943
PAX4
M05431_2.00
Homo sapiens
NRYTWYACGCWTSRNYRNNYV
BRNNYRNYSAWGCGTRWARYN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_2
0.945
0.945
PAX4
M05432_2.00
Homo sapiens
NTYACGCWYSRNYKMVYN
NRBKMRNYSRWGCGTRAN
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_3
0.943
0.943
PAX4
M05433_2.00
Homo sapiens
WHACGSTMATTDR
YHAATKASCGTDW
SELEX
Yin et al.(2017)
PAX4_eDBD_HT-SELEX_4
0.943
0.943
PAX4
M10811_2.00
Homo sapiens
NVNBSNNYVCGCHTSAMBNCN
NGNVKTSADGCGBRNNSVNBN
Transfac
Matys et al.(2006)
V$PAX4_01
0.943
0.943
PAX4
M10812_2.00
Homo sapiens
NAHWAATTDVV
BBHAATTWDTN
Transfac
Matys et al.(2006)
V$PAX4_02
0.943
0.943
PAX4
M10813_2.00
Homo sapiens
NDNNHYCACCCB
VGGGTGRDNNHN
Transfac
Matys et al.(2006)
V$PAX4_03
0.943
0.943
PAX4
M10814_2.00
Homo sapiens
RRAAAWWRNNHHNVHHNVHVNNHHSAYHSB
VSDRTSDDNNBDBNDDBNDDNNYWWTTTYY
Transfac
Matys et al.(2006)
V$PAX4_04
0.943
0.943
PAX4
M10815_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX4_Q2
0.943
0.943
PAX4
M05434_2.00
Homo sapiens
NHATTANBTAATDN
NHATTAVNTAATDN
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_1
0.945
0.945
PAX4
M05435_2.00
Homo sapiens
VATTWYACGCWTSRNYDVNYN
NRNBHRNYSAWGCGTRWAATB
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_2
0.943
0.943
PAX4
M05436_2.00
Homo sapiens
HTYACGCWTSANYGMNYN
NRNKCRNTSAWGCGTRAD
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_3
0.943
0.943
PAX4
M05437_2.00
Homo sapiens
DHRYGCTAATTAN
NTAATTAGCRYDH
SELEX
Yin et al.(2017)
PAX4_eDBD_Methyl-HT-SELEX_4
0.943
0.943
PAX4
M00347_2.00
Homo sapiens
NNNATND
HNATNNN
PBM
Barrera et al.(2016)
PAX4_R183C
0.937
0.937
PAX4
M00348_2.00
Homo sapiens
NNDATTAN
NTAATHNN
PBM
Barrera et al.(2016)
PAX4_R192H
0.937
0.937
PAX4
M00349_2.00
Homo sapiens
NNNATTANN
NNTAATNNN
PBM
Barrera et al.(2016)
PAX4_R192S
0.937
0.937
Pax4
M00542_2.00
Mus musculus
NNNATTAN
NTAATNNN
PBM
Berger et al.(2008)
Pax4_3989
0.920
0.920
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSSCP00000017575
Paired box
5
129
GISSVNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRRLKVSNGCVSKILGRYYRTGALEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSSSCP00000017575
Homeodomain
171
227
HRNRTIFSPGQAEALEKEFQRGQYPDSVARGKLAAATSLPEDTVRIWFSNRRAKWRR
ENSSSCP00000022443
Paired box
23
147
GISSVNQLGGLFVNGRPLPLDTRQQIVRLAVSGMRPCDISRRLKVSNGCVSKILGRYYRTGALEPKGIGGSKPRLATPPVVARIAQLKGECPALFAWEIQRQLCAEGLCTQDKTPSVSSINRVLR
ENSSSCP00000022443
Homeodomain
225
273
HRNRTIFSPGQAEALEKEFQRGQYPDSVARGKLAAATSLPEDTVRIWFS
Links
Other
Homeodomain,Paired box
family TFs
Other
Sus scrofa
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSOARG00000001951
Ovis aries
ENSOARG00000001951
I
0.984
PAX4
Vicugna pacos
ENSVPAG00000008301
I
0.983
PAX4
Callithrix jacchus
ENSCJAG00000017652
I
0.978
PAX4
Canis familiaris
ENSCAFG00000001719
I
0.978
PAX4
Equus caballus
ENSECAG00000008343
I
0.973
ENSBTAP00000042667-D1
Bos grunniens
ENSBTAP00000042667-D1
I
0.973
PAX4
Bos taurus
ENSBTAG00000000410
I
0.973
ENSAMEG00000004648
Ailuropoda melanoleuca
ENSAMEG00000004648
I
0.973
PAX4
Microcebus murinus
ENSMICG00000000095
I
0.973
ENSCSAG00000010195
Chlorocebus sabaeus
ENSCSAG00000010195
I
0.972
PAX4
Loxodonta africana
ENSLAFG00000005297
I
0.971
ENSNLEG00000012257
Nomascus leucogenys
ENSNLEG00000012257
I
0.967
PAX4
Pan troglodytes
ENSPTRG00000019653
I
0.967
ENSP00000368014
Macaca fascicularis
ENSP00000368014
I
0.967
PAX4
Procavia capensis
ENSPCAG00000016257
I
0.967
Myotis_brandtii_Pax4_10010526
Myotis brandtii
Myotis_brandtii_Pax4_10010526
I
0.967
PAX4
Oryctolagus cuniculus
ENSOCUG00000001612
I
0.967
PAX4
Macaca mulatta
ENSMMUG00000015429
I
0.967
PAX4
Gorilla gorilla
ENSGGOG00000002555
I
0.967
PAX4
Homo sapiens
ENSG00000106331
D
0.967
ENSPPYG00000017971
Pongo abelii
ENSPPYG00000017971
I
0.962
PAX4
Felis catus
ENSFCAG00000005485
I
0.962
PAX4
Pteropus vampyrus
ENSPVAG00000013944
I
0.962
PAX4
Ochotona princeps
ENSOPRG00000013381
I
0.959
ENSMPUG00000006575
Mustela putorius furo
ENSMPUG00000006575
I
0.956
PAX4
Myotis lucifugus
ENSMLUG00000030302
I
0.956
PAX4
Tursiops truncatus
ENSTTRG00000006056
I
0.956
ENSDNOG00000030639
Dasypus novemcinctus
ENSDNOG00000030639
I
0.951
PAX4
Otolemur garnettii
ENSOGAG00000013348
I
0.951
PAX4
Erinaceus europaeus
ENSEEUG00000009616
I
0.950
ENSSTOG00000002127
Ictidomys tridecemlineatus
ENSSTOG00000002127
I
0.945
Pax4
Rattus norvegicus
ENSRNOG00000008020
I
0.934
PAX4
Cavia porcellus
ENSCPOG00000006244
I
0.934
Pax4
Dipodomys ordii
ENSDORG00000000332
I
0.929
PAX4
Choloepus hoffmanni
ENSCHOG00000009265
I
0.926
Pax4
Mus musculus
ENSMUSG00000029706
D
0.923
PAX4
Sorex araneus
ENSSARG00000004842
I
0.912
ENSSHAG00000015143
Sarcophilus harrisii
ENSSHAG00000015143
I
0.857
PAX4
Ornithorhynchus anatinus
ENSOANG00000000819
I
0.817
Afo_R008534
Aptenodytes forsteri
Afo_R008534
I
0.758
Alligator_sinensis_CCG000926.1
Alligator sinensis
Alligator_sinensis_CCG000926.1
I
0.724
pax6b
Oryzias latipes
ENSORLG00000009913
I
0.703
ENSXMAG00000014260
Xiphophorus maculatus
ENSXMAG00000014260
I
0.703