Bo8g105450 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo8g105450 T245016_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.717 0.717
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g105450.1 LOB 14 112

Links

Other LOB family TFs
Other Brassica oleracea TFs

183 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.960
Bra026716 Brassica rapa Bra026716 I 0.960
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.949
LBD3 Arabidopsis thaliana AT1G16530 I 0.939
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.929
Bra026042 Brassica rapa Bra026042 I 0.929
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.919
Bo5g021980 Brassica oleracea Bo5g021980 I 0.909
30169.m006340 Ricinus communis 30169.m006340 I 0.778
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.778
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.778
Pm011040 Prunus mume Pm011040 I 0.778
Cla013678 Citrullus lanatus Cla013678 I 0.778
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.778
PK11564.1 Cannabis sativa PK11564.1 I 0.778
MDP0000268890 Malus domestica MDP0000268890 I 0.778
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.778
MDP0000284409 Malus domestica MDP0000284409 I 0.778
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.778
TCM_032557 Theobroma cacao TCM_032557 I 0.768
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.768
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.768
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.758
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.758
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.758
MDP0000121203 Malus domestica MDP0000121203 I 0.758
Ca_13575 Cicer arietinum Ca_13575 I 0.758
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.758
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.758
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.758
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.758
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.758
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.758
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.758
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.758
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.758
Ca_06548 Cicer arietinum Ca_06548 I 0.758
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.758
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.758
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.758
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.758
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.747
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.747
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.747
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.747
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.747
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.747
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.747
TCM_029315 Theobroma cacao TCM_029315 I 0.747
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.747
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.747
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.747
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.747
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.747
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.747
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.747
PK24688.1 Cannabis sativa PK24688.1 I 0.747
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.747
Cla009336 Citrullus lanatus Cla009336 I 0.747
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.747
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.737
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.737
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.737
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.737
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.737
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.737
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.737
PK17019.1 Cannabis sativa PK17019.1 I 0.735
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.731
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.727
mgf022958m Mimulus guttatus mgf022958m I 0.727
Bo4g170770 Brassica oleracea Bo4g170770 I 0.727
Bra021612 Brassica rapa Bra021612 I 0.727
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.727
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.727
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.727
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.727
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.727
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.727
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.727
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.727
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.727
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.727
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.727
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
mgf026046m Mimulus guttatus mgf026046m I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.717
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.717
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.717
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.717
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.717
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.717
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.717
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.717
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.717
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.717
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.717
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.717
Bra018335 Brassica rapa Bra018335 I 0.717
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.717
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.717
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
LBD4 Arabidopsis thaliana AT1G31320 D 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
LBD12 Arabidopsis thaliana AT2G30130 I 0.717
Bra014907 Brassica rapa Bra014907 I 0.717
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.717
MDP0000265429 Malus domestica MDP0000265429 I 0.717
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.717
Ca_08998 Cicer arietinum Ca_08998 I 0.717
Ca_12450 Cicer arietinum Ca_12450 I 0.717
Pm018982 Prunus mume Pm018982 I 0.717
Bo4g059700 Brassica oleracea Bo4g059700 I 0.717
MDP0000861160 Malus domestica MDP0000861160 I 0.717
Bo7g041000 Brassica oleracea Bo7g041000 I 0.717
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.717
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.717
29729.m002278 Ricinus communis 29729.m002278 I 0.717
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.717
TCM_042447 Theobroma cacao TCM_042447 I 0.717
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.712
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.710
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.707
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.707
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.707
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.707
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.707
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.707
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.707
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.707
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.707
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.707
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.707
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.707
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Si024229m.g Setaria italica Si024229m.g I 0.707
OS05G0346800 Oryza sativa OS05G0346800 I 0.707
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.707
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.707
OBART05G12620 Oryza barthii OBART05G12620 I 0.707
OB05G20740 Oryza brachyantha OB05G20740 I 0.707
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.707
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.707
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.707
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.707
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.707
TCM_042212 Theobroma cacao TCM_042212 I 0.707
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.707
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.707
Bra022780 Brassica rapa Bra022780 I 0.707
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.707
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.707
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.707
Pm000193 Prunus mume Pm000193 I 0.707
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.707
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.707
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.707
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.707
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.707
Cla007354 Citrullus lanatus Cla007354 I 0.707
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.707
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.707
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.707