LBD3 (Arabidopsis thaliana)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 AT1G16530 T244866_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.727 0.727
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.717 0.717
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT1G16530.1 LOB 14 113

Links

Other LOB family TFs
Other Arabidopsis thaliana TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.970
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.949
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.939
Bo8g105450 Brassica oleracea Bo8g105450 I 0.939
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.929
Bra026716 Brassica rapa Bra026716 I 0.929
Bra026042 Brassica rapa Bra026042 I 0.909
Bo5g021980 Brassica oleracea Bo5g021980 I 0.889
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.809
MDP0000268890 Malus domestica MDP0000268890 I 0.778
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.778
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.778
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.778
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.778
Cla013678 Citrullus lanatus Cla013678 I 0.778
TCM_032557 Theobroma cacao TCM_032557 I 0.778
Pm011040 Prunus mume Pm011040 I 0.778
30169.m006340 Ricinus communis 30169.m006340 I 0.778
MDP0000284409 Malus domestica MDP0000284409 I 0.778
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.778
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.778
PK11564.1 Cannabis sativa PK11564.1 I 0.778
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.768
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.768
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.768
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.768
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.768
Ca_13575 Cicer arietinum Ca_13575 I 0.768
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.768
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.768
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.768
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.768
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.768
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.768
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.768
MDP0000121203 Malus domestica MDP0000121203 I 0.768
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.768
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.768
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.758
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.758
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.758
TCM_029315 Theobroma cacao TCM_029315 I 0.758
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.758
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.758
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.758
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.758
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.758
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.758
PK24688.1 Cannabis sativa PK24688.1 I 0.758
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.758
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.758
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.758
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.758
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.758
Ca_06548 Cicer arietinum Ca_06548 I 0.758
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.758
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.758
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.758
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.758
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.750
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.747
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.747
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.747
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.747
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.747
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.747
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.747
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.737
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.737
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.737
mgf026046m Mimulus guttatus mgf026046m I 0.737
mgf022958m Mimulus guttatus mgf022958m I 0.737
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.737
Cla009336 Citrullus lanatus Cla009336 I 0.737
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.737
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.737
Pm010668 Prunus mume Pm010668 I 0.731
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.731
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Bra014907 Brassica rapa Bra014907 I 0.727
LBD4 Arabidopsis thaliana AT1G31320 D 0.727
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.727
Bo7g041000 Brassica oleracea Bo7g041000 I 0.727
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.727
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.727
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.727
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.727
OS03G0659700 Oryza sativa OS03G0659700 I 0.723
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.717
Cla005598 Citrullus lanatus Cla005598 I 0.717
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.717
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.717
Si037583m.g Setaria italica Si037583m.g I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.717
OBART05G12620 Oryza barthii OBART05G12620 I 0.717
Pm018982 Prunus mume Pm018982 I 0.717
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.717
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.717
MDP0000861160 Malus domestica MDP0000861160 I 0.707
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.707
MDP0000265429 Malus domestica MDP0000265429 I 0.707
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.707
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.707
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.707
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.707
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.707
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.707
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.707
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.707
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.707
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.707
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.707
mgf018189m Mimulus guttatus mgf018189m I 0.707
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.707
OS05G0346800 Oryza sativa OS05G0346800 I 0.707
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.707
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
Si024229m.g Setaria italica Si024229m.g I 0.707
TCM_042447 Theobroma cacao TCM_042447 I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.707
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.707
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.707
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.707
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.707
OB05G20740 Oryza brachyantha OB05G20740 I 0.707
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.707
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.707
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.707
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.707
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.707
PK17019.1 Cannabis sativa PK17019.1 I 0.706
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.702