Cla005598 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla005598 T246331_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.778 0.778
gw1.238.28.1
M02262_2.00 		Physcomitrella patens
NNNNNVNGSN
NSCNBNNNNN		 PBM
Weirauch et al.(2014)
pTH8459 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla005598 LOB 17 115

Links

Other LOB family TFs
Other Citrullus lanatus TFs

282 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.919
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.848
Ca_13575 Cicer arietinum Ca_13575 I 0.838
Pm011040 Prunus mume Pm011040 I 0.838
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.838
MDP0000268890 Malus domestica MDP0000268890 I 0.838
PK11564.1 Cannabis sativa PK11564.1 I 0.838
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.838
MDP0000284409 Malus domestica MDP0000284409 I 0.838
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.828
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.828
Eucgr.F04424 Eucalyptus grandis Eucgr.F04424 I 0.828
GLYMA08G17990 Glycine max GLYMA08G17990 I 0.828
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.828
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.828
30169.m006340 Ricinus communis 30169.m006340 I 0.828
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.828
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.828
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.828
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.828
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.828
Cla013678 Citrullus lanatus Cla013678 I 0.828
Gorai.009G149900 Gossypium raimondii Gorai.009G149900 I 0.818
TCM_032557 Theobroma cacao TCM_032557 I 0.818
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.818
Lus10040638.g Linum usitatissimum Lus10040638.g I 0.818
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.818
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.818
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.818
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.808
PGSC0003DMG400021204 Solanum tuberosum PGSC0003DMG400021204 I 0.808
POPTR_0001s11610 Populus trichocarpa POPTR_0001s11610 I 0.808
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.808
Solyc02g069440.2 Solanum lycopersicum Solyc02g069440.2 I 0.808
TCM_029315 Theobroma cacao TCM_029315 I 0.808
mgf026046m Mimulus guttatus mgf026046m I 0.808
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.808
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.808
MDP0000121203 Malus domestica MDP0000121203 I 0.808
SapurV1A.0094s0480 Salix purpurea SapurV1A.0094s0480 I 0.808
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.808
Gorai.010G170700 Gossypium raimondii Gorai.010G170700 I 0.808
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.808
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.808
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.808
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.808
Ca_06548 Cicer arietinum Ca_06548 I 0.808
VIT_13s0067g01880 Vitis vinifera VIT_13s0067g01880 I 0.808
GLYMA15G41020 Glycine max GLYMA15G41020 I 0.808
mgf022958m Mimulus guttatus mgf022958m I 0.798
POPTR_0003s14880 Populus trichocarpa POPTR_0003s14880 I 0.798
mgf019461m Mimulus guttatus mgf019461m I 0.798
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.798
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.798
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.798
gene28202-v1.0-hybrid Fragaria vesca gene28202-v1.0-hybrid I 0.798
Ciclev10029962m.g Citrus clementina Ciclev10029962m.g I 0.798
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.798
Cucsa.236600 Cucumis sativus Cucsa.236600 I 0.798
Pm000193 Prunus mume Pm000193 I 0.798
Cla009336 Citrullus lanatus Cla009336 I 0.798
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.798
29729.m002278 Ricinus communis 29729.m002278 I 0.798
PRUPE_ppa012275mg Prunus persica PRUPE_ppa012275mg I 0.798
cassava26200.m1 Manihot esculenta cassava26200.m1 I 0.798
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.798
MDP0000155138 Malus domestica MDP0000155138 I 0.798
Ciclev10016993m.g Citrus clementina Ciclev10016993m.g I 0.798
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.798
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.798
orange1.1g031034m.g Citrus sinensis orange1.1g031034m.g I 0.798
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.798
MDP0000265429 Malus domestica MDP0000265429 I 0.798
chr4.CM0229.130.nc Lotus japonicus chr4.CM0229.130.nc I 0.798
SapurV1A.0059s0540 Salix purpurea SapurV1A.0059s0540 I 0.798
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.798
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.788
GLYMA09G02510 Glycine max GLYMA09G02510 I 0.788
GSMUA_Achr10G14880_001 Musa acuminata GSMUA_Achr10G14880_001 I 0.788
GLYMA07G35000 Glycine max GLYMA07G35000 I 0.788
GLYMA15G13410 Glycine max GLYMA15G13410 I 0.788
Pm018982 Prunus mume Pm018982 I 0.788
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.788
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.788
ASL5 Vitis vinifera VIT_06s0004g07200 I 0.788
TCM_042447 Theobroma cacao TCM_042447 I 0.788
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.788
GSMUA_Achr10G13050_001 Musa acuminata GSMUA_Achr10G13050_001 I 0.788
LBD4 Vitis vinifera VIT_00s0125g00290 I 0.788
LBD4 Arabidopsis thaliana AT1G31320 D 0.778
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.778
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.778
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.778
TCM_042212 Theobroma cacao TCM_042212 I 0.778
PK24688.1 Cannabis sativa PK24688.1 I 0.778
orange1.1g041989m.g Citrus sinensis orange1.1g041989m.g I 0.778
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.778
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.778
MDP0000861160 Malus domestica MDP0000861160 I 0.778
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.778
Gorai.003G149600 Gossypium raimondii Gorai.003G149600 I 0.778
MDP0000194766 Malus domestica MDP0000194766 I 0.778
Bo7g041000 Brassica oleracea Bo7g041000 I 0.778
Bra014907 Brassica rapa Bra014907 I 0.778
Ciclev10006208m.g Citrus clementina Ciclev10006208m.g I 0.778
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.778
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.778
mgf018189m Mimulus guttatus mgf018189m I 0.778
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.778
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.778
GLYMA02G43030 Glycine max GLYMA02G43030 I 0.778
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.778
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.778
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.778
GLYMA14G06140 Glycine max GLYMA14G06140 I 0.778
GSMUA_Achr6G15660_001 Musa acuminata GSMUA_Achr6G15660_001 I 0.778
Si037583m.g Setaria italica Si037583m.g I 0.778
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.769
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.768
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.768
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.768
ORGLA05G0108100 Oryza glaberrima ORGLA05G0108100 I 0.768
Eucgr.J00175 Eucalyptus grandis Eucgr.J00175 I 0.768
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.768
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.768
Cucsa.144430 Cucumis sativus Cucsa.144430 I 0.768
GLYMA11G29450 Glycine max GLYMA11G29450 I 0.768
Cla007354 Citrullus lanatus Cla007354 I 0.768
evm.TU.supercontig_19.133 Carica papaya evm.TU.supercontig_19.133 I 0.768
POPTR_0001s28840 Populus trichocarpa POPTR_0001s28840 I 0.768
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.768
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.768
chr3.CM0176.110.nc Lotus japonicus chr3.CM0176.110.nc I 0.768
LBD12 Arabidopsis thaliana AT2G30130 I 0.768
PDK_20s1728161g001 Phoenix dactylifera PDK_20s1728161g001 I 0.768
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.768
PDK_20s1810211g001 Phoenix dactylifera PDK_20s1810211g001 I 0.768
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.768
OBART05G12620 Oryza barthii OBART05G12620 I 0.768
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.768
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.768
Bo4g059700 Brassica oleracea Bo4g059700 I 0.768
Lus10031855.g Linum usitatissimum Lus10031855.g I 0.768
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.768
Bra018335 Brassica rapa Bra018335 I 0.768
ORUFI01G46340 Oryza rufipogon ORUFI01G46340 I 0.760
Ca_12450 Cicer arietinum Ca_12450 I 0.758
Bra021612 Brassica rapa Bra021612 I 0.758
Gorai.004G234100 Gossypium raimondii Gorai.004G234100 I 0.758
Traes_4BS_E9E0C550B Triticum aestivum Traes_4BS_E9E0C550B I 0.758
OMERI05G11330 Oryza meridionalis OMERI05G11330 I 0.758
OPUNC05G10670 Oryza punctata OPUNC05G10670 I 0.758
Traes_4DS_DA077BB06 Triticum aestivum Traes_4DS_DA077BB06 I 0.758
ORUFI05G13610 Oryza rufipogon ORUFI05G13610 I 0.758
TRIUR3_11841 Triticum urartu TRIUR3_11841 I 0.758
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.758
Eucgr.G03089 Eucalyptus grandis Eucgr.G03089 I 0.758
Bo4g170770 Brassica oleracea Bo4g170770 I 0.758
OGLUM05G13250 Oryza glumaepatula OGLUM05G13250 I 0.758
LPERR05G10020 Leersia perrieri LPERR05G10020 I 0.758
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.758
Solyc12g100150.1 Solanum lycopersicum Solyc12g100150.1 I 0.758
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.758
MTR_3g071590 Medicago truncatula MTR_3g071590 I 0.758
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.758
BGIOSGA018245 Oryza indica BGIOSGA018245 I 0.758
Si024229m.g Setaria italica Si024229m.g I 0.758
BGIOSGA018244 Oryza indica BGIOSGA018244 I 0.758
OB05G20740 Oryza brachyantha OB05G20740 I 0.758
OS05G0346800 Oryza sativa OS05G0346800 I 0.758
ONIVA05G13090 Oryza nivara ONIVA05G13090 I 0.758
GLYMA18G02780 Glycine max GLYMA18G02780 I 0.758
Ca_13388 Cicer arietinum Ca_13388 I 0.758
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.758
Ca_08998 Cicer arietinum Ca_08998 I 0.758
Cla013598 Citrullus lanatus Cla013598 I 0.758
Sb09g016240 Sorghum bicolor Sb09g016240 I 0.758
PK18922.1 Cannabis sativa PK18922.1 I 0.754
Pavir.Ca01985 Panicum virgatum Pavir.Ca01985 I 0.747
Traes_4AL_AD9C8CB77 Triticum aestivum Traes_4AL_AD9C8CB77 I 0.747
Lus10007525.g Linum usitatissimum Lus10007525.g I 0.747
SapurV1A.0566s0080 Salix purpurea SapurV1A.0566s0080 I 0.747
Traes_1BL_04EFBAECF Triticum aestivum Traes_1BL_04EFBAECF I 0.747
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.747
OPUNC03G25820 Oryza punctata OPUNC03G25820 I 0.747
GSMUA_Achr9G18030_001 Musa acuminata GSMUA_Achr9G18030_001 I 0.747
MTR_3g031660 Medicago truncatula MTR_3g031660 I 0.747
MLOC_54949 Hordeum vulgare MLOC_54949 I 0.747
Traes_1AL_DB7593004 Triticum aestivum Traes_1AL_DB7593004 I 0.747
Pavir.J21476 Panicum virgatum Pavir.J21476 I 0.747
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.747
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.747
GLYMA18G06530 Glycine max GLYMA18G06530 I 0.747
Pavir.J22399 Panicum virgatum Pavir.J22399 I 0.747
GRMZM2G044150 Zea mays GRMZM2G044150 I 0.747
Bo3g024350 Brassica oleracea Bo3g024350 I 0.747
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.747
GSMUA_Achr7G00880_001 Musa acuminata GSMUA_Achr7G00880_001 I 0.747
orange1.1g038565m.g Citrus sinensis orange1.1g038565m.g I 0.747
Bra022780 Brassica rapa Bra022780 I 0.747
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.747
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.747
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.747
GSMUA_Achr3G10050_001 Musa acuminata GSMUA_Achr3G10050_001 I 0.747
PGSC0003DMG402023851 Solanum tuberosum PGSC0003DMG402023851 I 0.747
OMERI01G39870 Oryza meridionalis OMERI01G39870 I 0.744
OBART03G28270 Oryza barthii OBART03G28270 I 0.737
MLOC_5148 Hordeum vulgare MLOC_5148 I 0.737
Si026864m.g Setaria italica Si026864m.g I 0.737
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.737
PDK_20s1342451g001 Phoenix dactylifera PDK_20s1342451g001 I 0.737
TRIUR3_11082 Triticum urartu TRIUR3_11082 I 0.737
GSMUA_Achr5G02190_001 Musa acuminata GSMUA_Achr5G02190_001 I 0.737
e_gw1.192.35.1 Physcomitrella patens e_gw1.192.35.1 I 0.737
Cagra.0824s0026 Capsella grandiflora Cagra.0824s0026 I 0.737
gw1.238.28.1 Physcomitrella patens gw1.238.28.1 D 0.737
gw1.66.118.1 Physcomitrella patens gw1.66.118.1 I 0.737
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.737
Lus10017431.g Linum usitatissimum Lus10017431.g I 0.727
Traes_5BL_CE4CF3B5C Triticum aestivum Traes_5BL_CE4CF3B5C I 0.727
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.727
F775_08326 Aegilops tauschii F775_08326 I 0.727
BRADI4G44850 Brachypodium distachyon BRADI4G44850 I 0.727
Ca_02507 Cicer arietinum Ca_02507 N 0.727
GSMUA_Achr2G13170_001 Musa acuminata GSMUA_Achr2G13170_001 I 0.727
GSMUA_Achr5G29470_001 Musa acuminata GSMUA_Achr5G29470_001 I 0.727
Gorai.009G112900 Gossypium raimondii Gorai.009G112900 I 0.727
Pm018585 Prunus mume Pm018585 I 0.717
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.717
LBD3 Arabidopsis lyrata Al_scaffold_0001_1711 I 0.717
MTR_2g093310 Medicago truncatula MTR_2g093310 I 0.717
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.717
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.717
Bo5g021980 Brassica oleracea Bo5g021980 I 0.717
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.717
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.717
GSMUA_Achr10G22970_001 Musa acuminata GSMUA_Achr10G22970_001 I 0.717
LBD3 Arabidopsis thaliana AT1G16530 I 0.717
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.717
Eucgr.J01123 Eucalyptus grandis Eucgr.J01123 I 0.717
Thhalv10009386m.g Eutrema salsugineum Thhalv10009386m.g I 0.717
GSMUA_Achr8G02800_001 Musa acuminata GSMUA_Achr8G02800_001 I 0.717
PK27389.1 Cannabis sativa PK27389.1 I 0.707
GLYMA20G31780 Glycine max GLYMA20G31780 I 0.707
Solyc11g072470.1 Solanum lycopersicum Solyc11g072470.1 I 0.707
AMTR_s00080p00153120 Amborella trichopoda AMTR_s00080p00153120 N 0.707
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.707
LjSGA_042891.1 Lotus japonicus LjSGA_042891.1 I 0.707
GSMUA_Achr7G15500_001 Musa acuminata GSMUA_Achr7G15500_001 I 0.707
CM1887.100.nc Lotus japonicus CM1887.100.nc I 0.707
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.707
30111.m000703 Ricinus communis 30111.m000703 I 0.707
GLYMA10G35760 Glycine max GLYMA10G35760 I 0.707
Ciclev10029283m.g Citrus clementina Ciclev10029283m.g I 0.707
Eucgr.B02465 Eucalyptus grandis Eucgr.B02465 I 0.707
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.707
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.707
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.707
SELMODRAFT_59324 Selaginella moellendorffii SELMODRAFT_59324 I 0.707
Bostr.7128s0261 Boechera stricta Bostr.7128s0261 I 0.707
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.707
GSMUA_Achr4G32000_001 Musa acuminata GSMUA_Achr4G32000_001 I 0.707
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.707
Bostr.27991s0074 Boechera stricta Bostr.27991s0074 N 0.707
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.707
Bra026042 Brassica rapa Bra026042 I 0.707
gene28478-v1.0-hybrid Fragaria vesca gene28478-v1.0-hybrid I 0.707
MDP0000218986 Malus domestica MDP0000218986 I 0.707
SELMODRAFT_68988 Selaginella moellendorffii SELMODRAFT_68988 I 0.707
TCM_041094 Theobroma cacao TCM_041094 I 0.707
MDP0000318244 Malus domestica MDP0000318244 I 0.707
OB05G11740 Oryza brachyantha OB05G11740 I 0.707
MDP0000319331 Malus domestica MDP0000319331 I 0.707
TCM_043081 Theobroma cacao TCM_043081 I 0.707
Ca_04287 Cicer arietinum Ca_04287 I 0.707
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.707
Gorai.001G129700 Gossypium raimondii Gorai.001G129700 I 0.707
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.707
Gorai.013G002900 Gossypium raimondii Gorai.013G002900 I 0.707
orange1.1g047491m.g Citrus sinensis orange1.1g047491m.g I 0.707
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.707
PK29334.1 Cannabis sativa PK29334.1 I 0.703