CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.209330
(
Cucumis sativus
)
MBD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01429 (MBD)
IPR001739
Cucsa.209330
T261362_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.209330.1
MBD
172
247
KPNIAQPPPGWQRLLHIRGEGSTKFADVYYTAPSGKKLRSMVDIQKYLIEHPEYQTEGVSMTRFSFQIPKPLREDY
Cucsa.209330.2
MBD
172
247
KPNIAQPPPGWQRLLHIRGEGSTKFADVYYTAPSGKKLRSMVDIQKYLIEHPEYQTEGVSMTRFSFQIPKPLREDY
Cucsa.209330.3
MBD
172
230
KPNIAQPPPGWQRLLHIRGEGSTKFADVYYTAPSGKKLRSMVDIQKVPNGRCIHDTVFI
Links
Other
MBD
family TFs
Other
Cucumis sativus
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.009G001500
Gossypium raimondii
Gorai.009G001500
N
0.847
Cla005887
Citrullus lanatus
Cla005887
N
0.780
Ciclev10008843m.g
Citrus clementina
Ciclev10008843m.g
N
0.746
orange1.1g019505m.g
Citrus sinensis
orange1.1g019505m.g
N
0.746
gene12231-v1.0-hybrid
Fragaria vesca
gene12231-v1.0-hybrid
N
0.729
Eucgr.C00067
Eucalyptus grandis
Eucgr.C00067
N
0.729
evm.TU.supercontig_115.32
Carica papaya
evm.TU.supercontig_115.32
N
0.729
POPTR_0018s14340
Populus trichocarpa
POPTR_0018s14340
N
0.722
SapurV1A.0001s2550
Salix purpurea
SapurV1A.0001s2550
N
0.712
cassava11725.valid.m1
Manihot esculenta
cassava11725.valid.m1
N
0.712