Solyc04g005710.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc04g005710.1 T280092_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.709 0.824
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.672 0.780
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.672 0.780
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.672 0.780
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc04g005710.1.1 Myb 20 66
Solyc04g005710.1.1 Myb 72 116

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.876
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.876
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.831
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.831
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.780
Ca_18779 Cicer arietinum Ca_18779 I 0.778
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.778
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.778
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.778
PK05123.1 Cannabis sativa PK05123.1 I 0.769
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.766
Cla010333 Citrullus lanatus Cla010333 I 0.766
MDP0000210970 Malus domestica MDP0000210970 I 0.764
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.756
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.756
Pm006532 Prunus mume Pm006532 I 0.756
29736.m002013 Ricinus communis 29736.m002013 I 0.750
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.748
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.748
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.748
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.748
MDP0000165523 Malus domestica MDP0000165523 I 0.748
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.748
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.748
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.741
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.741
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.740
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.739
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.739
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.739
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.731
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.731
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.729
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.724
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.724
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.724
mgf009409m Mimulus guttatus mgf009409m I 0.724
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.723
TCM_011776 Theobroma cacao TCM_011776 I 0.718
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.715
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.714
MYB124 Arabidopsis thaliana AT1G14350 D 0.709
Bra024804 Brassica rapa Bra024804 I 0.706
Bo7g080730 Brassica oleracea Bo7g080730 I 0.706
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.692
Bra019658 Brassica rapa Bra019658 I 0.692
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.689
Bo2g136560 Brassica oleracea Bo2g136560 I 0.689
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.684
Bo5g019500 Brassica oleracea Bo5g019500 I 0.683
MYB88 Arabidopsis thaliana AT2G02820 D 0.672
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.672
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.672