Pavir.Bb03405 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Bb03405 T289045_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB88
M07042_2.00 		Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN		 Dap-seq
OMalley et al.(2016)
MYB88_col_a 		0.680 0.758
MYB88
M07043_2.00 		Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN		 Dap-seq
OMalley et al.(2016)
MYB88_colamp_a 		0.680 0.758
MYB88
M11038_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYB88_01 		0.680 0.758
MYB124
M01267_2.00 		Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN		 PBM
Lambert et al.(2019)
pTH11556 		0.679 0.780
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb03405.1.p Myb 30 75
Pavir.Bb03405.1.p Myb 81 125
Pavir.Bb03405.2.p Myb 30 75
Pavir.Bb03405.2.p Myb 81 125
Pavir.Bb03405.3.p Myb 30 75
Pavir.Bb03405.3.p Myb 81 125

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si029124m.g Setaria italica Si029124m.g I 0.870
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.858
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.832
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.832
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.826
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.826
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.823
OBART07G22930 Oryza barthii OBART07G22930 I 0.823
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.815
TRIUR3_24509 Triticum urartu TRIUR3_24509 N 0.810
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.806
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.806
OS07G0627300 Oryza sativa OS07G0627300 I 0.806
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.806
OB07G28520 Oryza brachyantha OB07G28520 I 0.801
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.786
LPERR07G19800 Leersia perrieri LPERR07G19800 I 0.775
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.727
Cla010333 Citrullus lanatus Cla010333 I 0.727
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.723
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.723
MDP0000210970 Malus domestica MDP0000210970 I 0.718
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.710
Pm006532 Prunus mume Pm006532 I 0.710
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.710
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.709
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.709
F775_07407 Aegilops tauschii F775_07407 N 0.704
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.702
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.702
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.702
MDP0000165523 Malus domestica MDP0000165523 I 0.702
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.702
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.702
Ca_18779 Cicer arietinum Ca_18779 I 0.702
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.702
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.702
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.702
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.702
TCM_011776 Theobroma cacao TCM_011776 I 0.702
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.702
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.702
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.699
OMERI03G12240 Oryza meridionalis OMERI03G12240 N 0.698
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.694
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.694
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.694
PK05123.1 Cannabis sativa PK05123.1 I 0.693
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.693
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.688
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.685
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.683
29736.m002013 Ricinus communis 29736.m002013 I 0.682
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.682
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.682
ONIVA07G22540 Oryza nivara ONIVA07G22540 N 0.681
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.680
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.680
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.680
Bo2g136560 Brassica oleracea Bo2g136560 I 0.680
MYB88 Arabidopsis thaliana AT2G02820 D 0.680
MYB124 Arabidopsis thaliana AT1G14350 D 0.679
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.679
mgf009409m Mimulus guttatus mgf009409m I 0.679
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.679
Bra019658 Brassica rapa Bra019658 I 0.679
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.672
Bo5g019500 Brassica oleracea Bo5g019500 I 0.670
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.669
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.666
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.666