BRN2 (Arabidopsis thaliana)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 AT4G10350 T292086_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BRN2
M07217_2.00		 Arabidopsis thaliana
CKTVHDNNNYAMGYWA
TWRCKTRNNNHDBAMG		 Dap-seq
OMalley et al.(2016)
ANAC070_colamp_a		 (Direct) (Direct)
BRN2
M07218_2.00		 Arabidopsis thaliana
TWDCKTVHDNHDYAMGYWAHH
DDTWRCKTRHDNHDBAMGHWA		 Dap-seq
OMalley et al.(2016)
ANAC070_col		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMB
M07184_2.00 		Arabidopsis thaliana
TWNCKTVHDNHNYAMGYWAYH
DRTWRCKTRNDNHDBAMGNWA		 Dap-seq
OMalley et al.(2016)
SMB_col_a 		0.922 0.825
SMB
M07185_2.00 		Arabidopsis thaliana
TWNCKTVNNNNNYAMG
CKTRNNNNNBAMGNWA		 Dap-seq
OMalley et al.(2016)
SMB_colamp_a 		0.922 0.825
MDP0000762302
M02383_2.00 		Malus domestica
NNNAMKHNWN
NWNDMKTNNN		 PBM
Weirauch et al.(2014)
pTH9205 		0.912 0.798
NAC012
M00971_2.00 		Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN		 PBM
Lindemose et al.(2014)
SND1 		0.902 0.807
OS06G0131700
M02378_2.00 		Oryza sativa
NNNNHMDNND
HNNHKDNNNN		 PBM
Weirauch et al.(2014)
pTH8356 		0.873 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT4G10350.1 NAC/NAM 10 137
AT4G10350.2 NAC/NAM 2 90

Links

Other NAC/NAM family TFs
Other Arabidopsis thaliana TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g088300 Brassica oleracea Bo9g088300 I 0.977
ANAC070 Arabidopsis lyrata Al_scaffold_0006_3164 I 0.977
Bra037914 Brassica rapa Bra037914 I 0.977
Thhalv10029403m.g Eutrema salsugineum Thhalv10029403m.g I 0.977
Bra000709 Brassica rapa Bra000709 I 0.974
Carubv10003879m.g Capsella rubella Carubv10003879m.g I 0.974
Cagra.12686s0005 Capsella grandiflora Cagra.12686s0005 I 0.974
Bostr.25463s0283 Boechera stricta Bostr.25463s0283 I 0.974
Thhalv10008226m.g Eutrema salsugineum Thhalv10008226m.g I 0.973
GLYMA09G36820 Glycine max GLYMA09G36820 I 0.972
VIT_18s0089g01120 Vitis vinifera VIT_18s0089g01120 I 0.972
Bostr.3359s0042 Boechera stricta Bostr.3359s0042 I 0.972
ANAC015 Arabidopsis lyrata fgenesh2_kg.1__3458__AT1G33280.1 I 0.972
BRN1 Arabidopsis thaliana AT1G33280 I 0.972
Eucgr.F04097 Eucalyptus grandis Eucgr.F04097 I 0.972
29382.m000084 Ricinus communis 29382.m000084 I 0.971
Cagra.6133s0030 Capsella grandiflora Cagra.6133s0030 I 0.971
MDP0000558493 Malus domestica MDP0000558493 I 0.971
orange1.1g042376m.g Citrus sinensis orange1.1g042376m.g I 0.971
Pm022820 Prunus mume Pm022820 I 0.971
PRUPE_ppa026376mg Prunus persica PRUPE_ppa026376mg I 0.971
Lus10039153.g Linum usitatissimum Lus10039153.g I 0.971
Gorai.004G267300 Gossypium raimondii Gorai.004G267300 I 0.971
gene31175-v1.0-hybrid Fragaria vesca gene31175-v1.0-hybrid I 0.971
Aquca_014_00032 Aquilegia coerulea Aquca_014_00032 I 0.971
Ciclev10024588m.g Citrus clementina Ciclev10024588m.g I 0.971
Carubv10010920m.g Capsella rubella Carubv10010920m.g I 0.971
Lus10013782.g Linum usitatissimum Lus10013782.g I 0.971
Cucsa.237820 Cucumis sativus Cucsa.237820 I 0.970
MTR_4g035590 Medicago truncatula MTR_4g035590 I 0.970
Ca_15792 Cicer arietinum Ca_15792 I 0.970
MDP0000257674 Malus domestica MDP0000257674 I 0.970
GLYMA12G00540 Glycine max GLYMA12G00540 I 0.970
Cla012576 Citrullus lanatus Cla012576 I 0.970
AMTR_s00099p00131560 Amborella trichopoda AMTR_s00099p00131560 I 0.968
TCM_036034 Theobroma cacao TCM_036034 I 0.968
MLOC_19175 Hordeum vulgare MLOC_19175 I 0.966
Traes_2AL_F0B17F0EA Triticum aestivum Traes_2AL_F0B17F0EA I 0.966
BRADI5G11247 Brachypodium distachyon BRADI5G11247 I 0.966
Traes_2DL_70F83D4B9 Triticum aestivum Traes_2DL_70F83D4B9 I 0.966
F775_23174 Aegilops tauschii F775_23174 I 0.966
Traes_2BL_209C14A8F Triticum aestivum Traes_2BL_209C14A8F I 0.966
OLONG_020428 Oryza longistaminata OLONG_020428 I 0.965
BGIOSGA034998 Oryza indica BGIOSGA034998 I 0.965
ONIVA04G12040 Oryza nivara ONIVA04G12040 I 0.965
BGIOSGA015018 Oryza indica BGIOSGA015018 I 0.965
GRMZM2G099144 Zea mays GRMZM2G099144 I 0.965
OBART04G13830 Oryza barthii OBART04G13830 I 0.965
Si012319m.g Setaria italica Si012319m.g I 0.964
OGLUM04G13590 Oryza glumaepatula OGLUM04G13590 I 0.964
Pavir.J07268 Panicum virgatum Pavir.J07268 I 0.964
OB04G21050 Oryza brachyantha OB04G21050 I 0.964
Sb06g017720 Sorghum bicolor Sb06g017720 I 0.964
Pavir.Gb01599 Panicum virgatum Pavir.Gb01599 I 0.964
ORUFI04G15090 Oryza rufipogon ORUFI04G15090 I 0.963
TRIUR3_28259 Triticum urartu TRIUR3_28259 I 0.963
GSMUA_Achr6G28890_001 Musa acuminata GSMUA_Achr6G28890_001 I 0.961
GRMZM2G435824 Zea mays GRMZM2G435824 I 0.961
cassava4621.m1 Manihot esculenta cassava4621.m1 I 0.961
Solyc06g063430.1 Solanum lycopersicum Solyc06g063430.1 I 0.960
POPTR_0013s09280 Populus trichocarpa POPTR_0013s09280 I 0.956
mgf017656m Mimulus guttatus mgf017656m I 0.955
SapurV1A.1219s0030 Salix purpurea SapurV1A.1219s0030 I 0.955
POPTR_0019s09400 Populus trichocarpa POPTR_0019s09400 I 0.939
SapurV1A.0907s0070 Salix purpurea SapurV1A.0907s0070 I 0.936
PK10271.1 Cannabis sativa PK10271.1 I 0.934
Ca_13929 Cicer arietinum Ca_13929 I 0.934
Pm010886 Prunus mume Pm010886 I 0.934
29725.m000235 Ricinus communis 29725.m000235 I 0.934
gene19898-v1.0-hybrid Fragaria vesca gene19898-v1.0-hybrid I 0.934
TCM_033728 Theobroma cacao TCM_033728 I 0.934
PRUPE_ppa025341mg Prunus persica PRUPE_ppa025341mg I 0.934
Gorai.004G268500 Gossypium raimondii Gorai.004G268500 I 0.933
GSMUA_Achr2G05640_001 Musa acuminata GSMUA_Achr2G05640_001 I 0.933
SMB Vitis vinifera VIT_19s0085g01210 I 0.931
cassava32687.m1 Manihot esculenta cassava32687.m1 I 0.931
MTR_2g062730 Medicago truncatula MTR_2g062730 I 0.931
LjSGA_059487.1 Lotus japonicus LjSGA_059487.1 I 0.931
GLYMA08G17140 Glycine max GLYMA08G17140 I 0.931
Cla005561 Citrullus lanatus Cla005561 I 0.929
MDP0000652584 Malus domestica MDP0000652584 I 0.928
PGSC0003DMG400009665 Solanum tuberosum PGSC0003DMG400009665 I 0.928
MDP0000501518 Malus domestica MDP0000501518 I 0.928
Solyc12g017400.1 Solanum lycopersicum Solyc12g017400.1 I 0.928
Bra003602 Brassica rapa Bra003602 I 0.928
GLYMA15G42050 Glycine max GLYMA15G42050 I 0.927
mg017416m Mimulus guttatus mg017416m I 0.923
Bra035127 Brassica rapa Bra035127 I 0.923
Bo6g123980 Brassica oleracea Bo6g123980 I 0.923
Cagra.1725s0032 Capsella grandiflora Cagra.1725s0032 I 0.922
Bostr.20129s0396 Boechera stricta Bostr.20129s0396 I 0.922
Carubv10020504m.g Capsella rubella Carubv10020504m.g I 0.922
Bo6g080930 Brassica oleracea Bo6g080930 I 0.922
SMB Arabidopsis lyrata scaffold_202942.1 I 0.922
Thhalv10019534m.g Eutrema salsugineum Thhalv10019534m.g I 0.922
SMB Arabidopsis thaliana AT1G79580 D 0.922
POPTR_0008s07950 Populus trichocarpa POPTR_0008s07950 I 0.921
SapurV1A.0093s0460 Salix purpurea SapurV1A.0093s0460 I 0.921
SapurV1A.0164s0070 Salix purpurea SapurV1A.0164s0070 I 0.921
POPTR_0010s18420 Populus trichocarpa POPTR_0010s18420 I 0.921
cassava39971.m1 Manihot esculenta cassava39971.m1 I 0.921
GRMZM2G104074 Zea mays GRMZM2G104074 I 0.918
GRMZM2G041746 Zea mays GRMZM2G041746 I 0.918
Sb10g020860 Sorghum bicolor Sb10g020860 I 0.918
Bo2g095440 Brassica oleracea Bo2g095440 I 0.918
Pavir.Aa02770 Panicum virgatum Pavir.Aa02770 I 0.917
Si017641m.g Setaria italica Si017641m.g I 0.917
Pavir.Ab01037 Panicum virgatum Pavir.Ab01037 I 0.917
Cucsa.240210 Cucumis sativus Cucsa.240210 I 0.917
BRADI1G38730 Brachypodium distachyon BRADI1G38730 I 0.916
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.916
Traes_7AL_46F73E667 Triticum aestivum Traes_7AL_46F73E667 I 0.915
F775_42361 Aegilops tauschii F775_42361 I 0.915
Bra008423 Brassica rapa Bra008423 I 0.915
MLOC_17128 Hordeum vulgare MLOC_17128 I 0.915
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.915
TRIUR3_14210 Triticum urartu TRIUR3_14210 I 0.915
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.915
Traes_7DL_AD6EAD1A6 Triticum aestivum Traes_7DL_AD6EAD1A6 I 0.915
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.915
Traes_7DL_AD6EAD1A61 Triticum aestivum Traes_7DL_AD6EAD1A61 I 0.915
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.914
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.914
Pavir.J05053 Panicum virgatum Pavir.J05053 I 0.914
Pavir.Da01009 Panicum virgatum Pavir.Da01009 I 0.914
Si007822m.g Setaria italica Si007822m.g I 0.914
Sb04g009180 Sorghum bicolor Sb04g009180 I 0.914
OB02G19660 Oryza brachyantha OB02G19660 I 0.914
BRADI3G09520 Brachypodium distachyon BRADI3G09520 I 0.914
LPERR02G09170 Leersia perrieri LPERR02G09170 I 0.913
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.912
MDP0000140229 Malus domestica MDP0000140229 I 0.912
PK22182.1 Cannabis sativa PK22182.1 I 0.912
MDP0000762302 Malus domestica MDP0000762302 D 0.912
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.911
OPUNC02G09610 Oryza punctata OPUNC02G09610 I 0.911
evm.TU.supercontig_118.26 Carica papaya evm.TU.supercontig_118.26 I 0.911
GRMZM2G155816 Zea mays GRMZM2G155816 I 0.908
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.908
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.907
30068.m002591 Ricinus communis 30068.m002591 I 0.906
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.906
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.906
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.906
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.906
TCM_015621 Theobroma cacao TCM_015621 I 0.906
ONIVA02G12010 Oryza nivara ONIVA02G12010 I 0.905
orange1.1g046523m.g Citrus sinensis orange1.1g046523m.g I 0.905
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.905
OLONG_007664 Oryza longistaminata OLONG_007664 I 0.905
ORGLA02G0097800 Oryza glaberrima ORGLA02G0097800 I 0.905
BGIOSGA007898 Oryza indica BGIOSGA007898 I 0.905
OBART02G10820 Oryza barthii OBART02G10820 I 0.905
OGLUM02G10770 Oryza glumaepatula OGLUM02G10770 I 0.905
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.905
Ciclev10006623m.g Citrus clementina Ciclev10006623m.g I 0.905
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.905
OS02G0252200 Oryza sativa OS02G0252200 I 0.904
Pm024260 Prunus mume Pm024260 I 0.904
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.904
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.904
ORUFI02G10740 Oryza rufipogon ORUFI02G10740 I 0.904
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.902
mgf025569m Mimulus guttatus mgf025569m I 0.902
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.902
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.902
NAC012 Arabidopsis thaliana AT1G32770 D 0.902
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.902
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.902
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.902
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.901
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.901
OS06G0530400 Oryza sativa OS06G0530400 I 0.901
OB06G24850 Oryza brachyantha OB06G24850 I 0.901
Bo5g049360 Brassica oleracea Bo5g049360 I 0.901
LPERR06G14120 Leersia perrieri LPERR06G14120 I 0.901
OBART06G17120 Oryza barthii OBART06G17120 I 0.901
ORUFI06G18140 Oryza rufipogon ORUFI06G18140 I 0.901
ONIVA06G20460 Oryza nivara ONIVA06G20460 I 0.901
OPUNC06G15490 Oryza punctata OPUNC06G15490 I 0.901
OMERI06G17980 Oryza meridionalis OMERI06G17980 I 0.901
BGIOSGA021116 Oryza indica BGIOSGA021116 I 0.901
OGLUM06G18230 Oryza glumaepatula OGLUM06G18230 I 0.901
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.900
Bra023288 Brassica rapa Bra023288 I 0.897
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.897
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.895
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.895
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.894
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.892
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.892
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.892
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.892
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.890
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.890
Cla011508 Citrullus lanatus Cla011508 I 0.890
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.889
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.888
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.887
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.887
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.887
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.885
F775_11081 Aegilops tauschii F775_11081 I 0.885
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.885
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.885
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.882
Gorai.007G048000 Gossypium raimondii Gorai.007G048000 I 0.882
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.881
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.880
SELMODRAFT_451784 Selaginella moellendorffii SELMODRAFT_451784 I 0.878
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.878
SELMODRAFT_57388 Selaginella moellendorffii SELMODRAFT_57388 I 0.878
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.877
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.877
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.876
GSMUA_Achr10G21750_001 Musa acuminata GSMUA_Achr10G21750_001 I 0.876
MTR_5g021710 Medicago truncatula MTR_5g021710 I 0.876
Si006565m.g Setaria italica Si006565m.g I 0.875
GRMZM2G171395 Zea mays GRMZM2G171395 I 0.874
SELMODRAFT_402243 Selaginella moellendorffii SELMODRAFT_402243 I 0.874
Sb10g020850 Sorghum bicolor Sb10g020850 I 0.874
Sb10g002120 Sorghum bicolor Sb10g002120 I 0.874
SELMODRAFT_408624 Selaginella moellendorffii SELMODRAFT_408624 I 0.874
OB06G11970 Oryza brachyantha OB06G11970 I 0.873
OBART06G01950 Oryza barthii OBART06G01950 I 0.873
BGIOSGA022006 Oryza indica BGIOSGA022006 I 0.873
OS06G0131700 Oryza sativa OS06G0131700 D 0.873
LPERR06G01790 Leersia perrieri LPERR06G01790 I 0.873
OPUNC06G01800 Oryza punctata OPUNC06G01800 I 0.873
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I 0.873
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I 0.873
ONIVA06G02290 Oryza nivara ONIVA06G02290 I 0.873
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I 0.873
OMERI06G01850 Oryza meridionalis OMERI06G01850 I 0.873
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I 0.872
MDP0000460430 Malus domestica MDP0000460430 I 0.872
GLYMA07G05660 Glycine max GLYMA07G05660 I 0.871
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I 0.871
GLYMA11G07990 Glycine max GLYMA11G07990 I 0.871
GLYMA16G02200 Glycine max GLYMA16G02200 I 0.871
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I 0.871
Ca_01981 Cicer arietinum Ca_01981 I 0.871
MTR_8g024480 Medicago truncatula MTR_8g024480 I 0.871
Bra010183 Brassica rapa Bra010183 I 0.871
Ca_22426 Cicer arietinum Ca_22426 I 0.871
Bo5g086900 Brassica oleracea Bo5g086900 I 0.871
GLYMA01G37310 Glycine max GLYMA01G37310 I 0.871