CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10018607m.g
(
Citrus clementina
)
NFX
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF01422 (zf-NF-X1)
IPR000967
Ciclev10018607m.g
T300962_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10018607m
NFX
238
255
CPHKCVLQCHPGPCPPCK
Ciclev10018607m
NFX
283
311
CGQHCNKHLECWRHKCEKICHVGPCGPCW
Ciclev10018607m
NFX
357
375
CGHHSCGEICHPGPCGDCE
Ciclev10018607m
NFX
415
433
CGLHYCDELCHAGNCPPCL
Ciclev10018607m
NFX
472
483
CGRHRCSERCCP
Ciclev10018607m
NFX
510
528
CGQHSCESLCHSGHCPPCL
Ciclev10018607m
NFX
567
584
CGHSASHSCHFGDCPPCS
Ciclev10018607m
NFX
620
639
CGMHACGRTCHPPPCDTACY
Ciclev10018607m
NFX
648
679
CGQVCGAPRRDCRHTCTALCHPSALCPDVRCE
Links
Other
NFX
family TFs
Other
Citrus clementina
TFs
36 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g001378m.g
Citrus sinensis
orange1.1g001378m.g
N
0.988
cassava4965.m1
Manihot esculenta
cassava4965.m1
N
0.858
POPTR_0012s04070
Populus trichocarpa
POPTR_0012s04070
N
0.852
Aquca_044_00077
Aquilegia coerulea
Aquca_044_00077
N
0.846
Gorai.006G058600
Gossypium raimondii
Gorai.006G058600
N
0.846
Cucsa.122080
Cucumis sativus
Cucsa.122080
N
0.840
Aquca_032_00102
Aquilegia coerulea
Aquca_032_00102
N
0.840
Bo5g010600
Brassica oleracea
Bo5g010600
N
0.840
ATNFXL1
Arabidopsis thaliana
AT1G10170
N
0.840
Bra019958
Brassica rapa
Bra019958
N
0.840
GLYMA09G30343
Glycine max
GLYMA09G30343
N
0.833
ATNFXL1
Arabidopsis lyrata
fgenesh2_kg.1__1086__AT1G10170.1
N
0.833
PK00983.1
Cannabis sativa
PK00983.1
N
0.827
TCM_012484
Theobroma cacao
TCM_012484
N
0.827
GLYMA08G06040
Glycine max
GLYMA08G06040
N
0.821
Lus10034470.g
Linum usitatissimum
Lus10034470.g
N
0.815
Eucgr.H00552
Eucalyptus grandis
Eucgr.H00552
N
0.815
Carubv10008145m.g
Capsella rubella
Carubv10008145m.g
N
0.815
Cagra.1508s0074
Capsella grandiflora
Cagra.1508s0074
N
0.815
TCM_017029
Theobroma cacao
TCM_017029
N
0.815
GLYMA07G11834
Glycine max
GLYMA07G11834
N
0.815
Lus10025071.g
Linum usitatissimum
Lus10025071.g
N
0.809
Eucgr.K02284
Eucalyptus grandis
Eucgr.K02284
N
0.802
fgenesh1_pg.C_scaffold_1003098
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_1003098
N
0.796
Bra031704
Brassica rapa
Bra031704
N
0.790
Cla018720
Citrullus lanatus
Cla018720
N
0.790
Sb10g009070
Sorghum bicolor
Sb10g009070
N
0.778
GRMZM2G087787
Zea mays
GRMZM2G087787
N
0.778
Sb04g038100
Sorghum bicolor
Sb04g038100
N
0.772
27791.m000083
Ricinus communis
27791.m000083
N
0.753
SapurV1A.0082s0290
Salix purpurea
SapurV1A.0082s0290
N
0.747
MDP0000280911
Malus domestica
MDP0000280911
N
0.747
PRUPE_ppa000543mg
Prunus persica
PRUPE_ppa000543mg
N
0.747
Pm025049
Prunus mume
Pm025049
N
0.747
Bo8g059130
Brassica oleracea
Bo8g059130
N
0.735
Bra018458
Brassica rapa
Bra018458
N
0.728